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    RPB5C RNA polymerase II fifth largest subunit, C [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835909, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPB5C
    Official Full Name
    RNA polymerase II fifth largest subunit, C
    Primary source
    TAIR:AT5G57980
    Locus tag
    AT5G57980
    See related
    Araport:AT5G57980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''RNA polymerase II fifth largest subunit; C; C''; MTI20.24; MTI20_24; RNA polymerase II fifth largest subunit
    Summary
    NRPB5-like protein of unknown function; homologous to budding yeast RPB5
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    Genomic context

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    See RPB5C in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (23468959..23469856, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit Neighboring gene GTP-binding protein, HflX Neighboring gene DNA glycosylase superfamily protein Neighboring gene ubiquitin-specific protease 23 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II fifth largest subunit, C
    NP_200606.1
    • ''RNA polymerase II fifth largest subunit, C'' (RPB5C); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, leaf whorl, sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G22320.1); Has 862 Blast hits to 862 proteins in 307 species: Archae - 143; Bacteria - 0; Metazoa - 161; Fungi - 219; Plants - 117; Viruses - 8; Other Eukaryotes - 214 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23468959..23469856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125183.2 → NP_200606.1  RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200606.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJL8
      UniProtKB/TrEMBL
      A0A178UMU7, A0A5S9YFI5, A0A654GC91
      Conserved Domains (1) summary
      PLN03111
      Location:1 → 210
      PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJL8.1

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