U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SVL4 SHV3-like 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835917, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SVL4
    Official Full Name
    SHV3-like 4
    Primary source
    TAIR:AT5G58050
    Locus tag
    AT5G58050
    See related
    Araport:AT5G58050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GDPDL6; Glycerophosphodiester phosphodiesterase (GDPD) like 6; K21L19.4; K21L19_4; SHV3-like 4
    Summary
    Encodes a member of the glycerophosphodiester phosphodiesterase like (GDPD-like) family.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SVL4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (23494249..23497601, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene LJRHL1-like 3 Neighboring gene RTF2 RING-finger protein Neighboring gene Transport protein particle (TRAPP) component Neighboring gene FIP1[V]-like protein Neighboring gene SNARE-like superfamily protein Neighboring gene temperature-induced lipocalin Neighboring gene response regulator 18

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis pollen-specific glycerophosphodiester phosphodiesterase-like genes are essential for pollen tube tip growth. Wang C, et al. J Integr Plant Biol, 2023 Aug. PMID 37014030
    2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_125190.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycerophosphodiester phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pollen tube development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in pollen tube growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    SHV3-like 4
    NP_200613.2
    • SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23494249..23497601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125190.4 → NP_200613.2  SHV3-like 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200613.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FGT9
      UniProtKB/TrEMBL
      A0A5S9YFA1
      Conserved Domains (5) summary
      cd08603
      Location:41 → 338
      GDPD_SHV3_repeat_1; Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
      cd08604
      Location:355 → 653
      GDPD_SHV3_repeat_2; Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
      COG0584
      Location:36 → 340
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      pfam03009
      Location:360 → 649
      GDPD; Glycerophosphoryl diester phosphodiesterase family
      pfam06346
      Location:688 → 733
      Drf_FH1; Formin Homology Region 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGT9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools