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    TAF15b TBP-associated factor 15B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835960, updated on 21-Oct-2024

    Summary

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    Official Symbol
    TAF15b
    Official Full Name
    TBP-associated factor 15B
    Primary source
    TAIR:AT5G58470
    Locus tag
    AT5G58470
    See related
    Araport:AT5G58470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQJ2.7; MQJ2_7; TBP-associated factor 15B
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    Genomic context

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    See TAF15b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (23637415..23640973, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cation/H+ exchanger 25 Neighboring gene ncRNA Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Role of TAF15b in transcriptional regulation of autonomous pathway for flowering. Eom H, et al. Plant Signal Behav, 2018. PMID 29944459, Free PMC Article
    2. C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 promotes flowering with TAF15b by repressing the floral repressor gene FLOWERING LOCUS C. Kyung J, et al. Mol Cells, 2024 Oct. PMID 39293741
    3. TAF15b, involved in the autonomous pathway for flowering, represses transcription of FLOWERING LOCUS C. Eom H, et al. Plant J, 2018 Jan. PMID 29086456
    4. Arabidopsis TAF15b Localizes to RNA Processing Bodies and Contributes to snc1-Mediated Autoimmunity. Dong OX, et al. Mol Plant Microbe Interact, 2016 Apr. PMID 26713351
    5. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 promotes flowering with TAF15b by repressing the floral repressor gene FLOWERING LOCUS C.
      Title: C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 promotes flowering with TAF15b by repressing the floral repressor gene FLOWERING LOCUS C.
    2. TAF15b regulates the expression of FLC by directly interacting with RNA polymerase II (Pol II) at the transcription start sites on both the sense and antisense strands of the FLC locus. In addition to the transcriptional regulation in the nucleus, TAF15b accumulates in processing bodies (p-bodies), which are cytoplasmic RNA granules involved in translational repression, during heat stress.
      Title: Role of TAF15b in transcriptional regulation of autonomous pathway for flowering.
    3. The results suggest that TAF15b affects flowering time through transcriptional repression of FLC in Arabidopsis.
      Title: TAF15b, involved in the autonomous pathway for flowering, represses transcription of FLOWERING LOCUS C.
    4. SNC1 protein accumulated in taf15b mutant, suggesting that TAF15b contributes to SNC1 homeostasis through posttranscriptional mechanisms.
      Title: Arabidopsis TAF15b Localizes to RNA Processing Bodies and Contributes to snc1-Mediated Autoimmunity.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125233.4
    NM_180884.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 

    General protein information

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    Preferred Names
    TBP-associated factor 15B
    NP_568879.3
    • TBP-associated factor 15B (TAF15b); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1); Has 115051 Blast hits to 45140 proteins in 2321 species: Archae - 166; Bacteria - 28654; Metazoa - 42717; Fungi - 9006; Plants - 12716; Viruses - 1451; Other Eukaryotes - 20341 (source: NCBI BLink).
    NP_851215.1
    • TBP-associated factor 15B (TAF15b); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1); Has 115051 Blast hits to 45140 proteins in 2321 species: Archae - 166; Bacteria - 28654; Metazoa - 42717; Fungi - 9006; Plants - 12716; Viruses - 1451; Other Eukaryotes - 20341 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23637415..23640973 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180884.2 → NP_851215.1  TBP-associated factor 15B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851215.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6S7B1, Q94KD0, Q9FGH5
      UniProtKB/TrEMBL
      A0A178UTZ9, A0A5S9YHJ6
      Conserved Domains (3) summary
      smart00547
      Location:88 → 111
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 109
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cd12280
      Location:282 → 368
      RRM_FET; RNA recognition motif (RRM) found in the FET family of RNA-binding proteins

    2. NM_125233.4 → NP_568879.3  TBP-associated factor 15B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568879.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6S7B1, Q94KD0, Q9FGH5
      UniProtKB/TrEMBL
      A0A178UTZ9, A0A5S9YHJ6
      Conserved Domains (3) summary
      smart00547
      Location:88 → 111
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 109
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cd12280
      Location:282 → 368
      RRM_FET; RNA recognition motif (RRM) found in the FET family of RNA-binding proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94KD0.1

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