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    late embryogenesis abundant protein-related / LEA protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836174, updated on 18-Sep-2024

    Summary

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    Official Full Name
    late embryogenesis abundant protein-related / LEA protein-like protein
    Primary source
    TAIR:AT5G60530
    Locus tag
    AT5G60530
    See related
    Araport:AT5G60530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUF9.16; MUF9_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (24333907..24335858, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Late embryogenesis abundant (LEA) protein-like protein Neighboring gene pyridoxine biosynthesis 2 Neighboring gene geminivirus rep interacting kinase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125446.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    late embryogenesis abundant protein-related / LEA protein-like protein
    NP_200861.1
    • late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G60520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24333907..24335858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125446.4 → NP_200861.1  late embryogenesis abundant protein-related / LEA protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200861.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAP0, A0A5S9YGY3, A0A654GCX5, Q940M3, Q9FKJ4
      Conserved Domains (1) summary
      pfam06830
      Location:372 → 428
      Root_cap; Root cap
    Nucleotide Protein
    Heading Accession and Version

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