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    DHBP synthase RibB-like alpha/beta domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836180, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DHBP synthase RibB-like alpha/beta domain-containing protein
    Primary source
    TAIR:AT5G60590
    Locus tag
    AT5G60590
    See related
    Araport:AT5G60590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUP24.1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (24357021..24358769)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene 4-hydroxy-3-methylbut-2-enyl diphosphate synthase Neighboring gene F-box/RNI-like superfamily protein Neighboring gene Defensin-like (DEFL) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_125452.4
    NM_203241.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DHBP synthase RibB-like alpha/beta domain-containing protein
    NP_568924.1
    • DHBP synthase RibB-like alpha/beta domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974970.1
    • DHBP synthase RibB-like alpha/beta domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); BEST Arabidopsis thaliana protein match is: DHBP synthase RibB-like alpha/beta domain (TAIR:AT3G01920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24357021..24358769
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345426.1 → NP_001331058.1  DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCP9

    2. NM_125452.4 → NP_568924.1  DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568924.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93W92
      Conserved Domains (1) summary
      cl00305
      Location:81 → 162
      Sua5_yciO_yrdC; Telomere recombination

    3. NM_203241.2 → NP_974970.1  DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974970.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIC3, F4K0E6, Q9FF60
      Conserved Domains (1) summary
      pfam01300
      Location:81 → 259
      Sua5_yciO_yrdC; Telomere recombination
    Nucleotide Protein
    Heading Accession and Version

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