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    SGNH hydrolase-type esterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836413, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SGNH hydrolase-type esterase superfamily protein
    Primary source
    TAIR:AT5G62930
    Locus tag
    AT5G62930
    See related
    Araport:AT5G62930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQB2.25; MQB2_25
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (25254821..25256619)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene basic-leucine zipper transcription factor K Neighboring gene RING/U-box superfamily protein Neighboring gene response regulator 6 Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene RNA polymerase II, Rpb4, core protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression Pattern and Functional Analyses of Arabidopsis Guard Cell-Enriched GDSL Lipases. Xiao C, et al. Front Plant Sci, 2021. PMID 34621289, Free PMC Article
    2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125687.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SGNH hydrolase-type esterase superfamily protein
    NP_201098.1
    • SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT5G45920.1); Has 689 Blast hits to 688 proteins in 254 species: Archae - 0; Bacteria - 229; Metazoa - 77; Fungi - 158; Plants - 171; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25254821..25256619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345566.1 → NP_001332344.1  SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGN5, A0A5S9YGI9, A0A654GEK2

    2. NM_001345567.1 → NP_001332345.1  SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGM5

    3. NM_125687.3 → NP_201098.1  SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201098.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FM04
      UniProtKB/TrEMBL
      A0A178UF04, A0A7G2FJ59
      Conserved Domains (1) summary
      cd01838
      Location:5 → 207
      Isoamyl_acetate_hydrolase_like; Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FM04.3

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