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    UBP17 ubiquitin-specific protease 17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836670, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBP17
    Official Full Name
    ubiquitin-specific protease 17
    Primary source
    TAIR:AT5G65450
    Locus tag
    AT5G65450
    See related
    Araport:AT5G65450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNA5.19; MNA5_19; ubiquitin-specific protease 17
    Summary
    Encodes a ubiquitin-specific protease.
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    Genomic context

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    See UBP17 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (26157535..26161331)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene tRNA-Ser Neighboring gene kinesin like protein for actin based chloroplast movement 2 Neighboring gene O-fucosyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_125943.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-specific protease 17
    NP_201348.1
    • ubiquitin-specific protease 17 (UBP17); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 16 (TAIR:AT4G24560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26157535..26161331
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345687.1 → NP_001332735.1  ubiquitin-specific protease 17 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCJ5, A0A1R7T3I4, A0A654GEC8
      Conserved Domains (2) summary
      cl02553
      Location:349 → 650
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam01753
      Location:76 → 113
      zf-MYND; MYND finger

    2. NM_125943.2 → NP_201348.1  ubiquitin-specific protease 17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201348.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FKP5
      UniProtKB/TrEMBL
      A0A178UCJ5
      Conserved Domains (3) summary
      cl02553
      Location:330 → 631
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:328 → 630
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam01753
      Location:57 → 94
      zf-MYND; MYND finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FKP5.1

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