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    pectinesterase, putative (DUF677) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836799, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pectinesterase, putative (DUF677)
    Primary source
    TAIR:AT5G66670
    Locus tag
    AT5G66670
    See related
    Araport:AT5G66670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSN2.5; MSN2_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (26611258..26613348, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene pectinesterase, putative (DUF677) Neighboring gene ncRNA Neighboring gene transmembrane protein, putative (DUF677)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085340.1
    NM_001345796.1
    NM_001345797.1
    NM_126065.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    pectinesterase, putative (DUF677)
    NP_001078809.1
    • Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT5G66660.1); Has 181 Blast hits to 176 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    NP_001318891.1
    • Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT5G66660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26611258..26613348 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345796.1 → NP_001318891.1  pectinesterase, putative (DUF677) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVR3
      UniProtKB/TrEMBL
      A0A654GEN6

    2. NM_126065.4 → NP_201468.1  pectinesterase, putative (DUF677) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201468.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVR3
      UniProtKB/TrEMBL
      A0A654GEN6
      Conserved Domains (1) summary
      pfam05055
      Location:55 → 391
      DUF677; Protein of unknown function (DUF677)

    3. NM_001345797.1 → NP_001331712.1  pectinesterase, putative (DUF677) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVR3
      UniProtKB/TrEMBL
      A0A654GEN6

    4. NM_001085340.1 → NP_001078809.1  pectinesterase, putative (DUF677) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078809.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVR3
      UniProtKB/TrEMBL
      A0A654GEN6
      Conserved Domains (1) summary
      pfam05055
      Location:55 → 391
      DUF677; Protein of unknown function (DUF677)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVR3.1

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