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    succinate dehydrogenase assembly factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836885, updated on 18-Sep-2024

    Summary

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    Official Full Name
    succinate dehydrogenase assembly factor
    Primary source
    TAIR:AT5G67490
    Locus tag
    AT5G67490
    See related
    Araport:AT5G67490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K9I9.5; K9I9_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (26934153..26934952, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene tRNA-Met Neighboring gene formin homolog 6 Neighboring gene BTB and TAZ domain protein 4 Neighboring gene ncRNA Neighboring gene voltage dependent anion channel 2 Neighboring gene Translation protein SH3-like family protein Neighboring gene adenosine-5'-phosphosulfate (APS) kinase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Assembly Factor Promotes Assembly of Flavinated SDH1 into the Succinate Dehydrogenase Complex. Belt K, et al. Plant Physiol, 2018 Aug. PMID 29930107, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_126149.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial respiratory chain complex II assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within tricarboxylic acid cycle IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    succinate dehydrogenase assembly factor
    NP_569049.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26934153..26934952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126149.2 → NP_569049.1  succinate dehydrogenase assembly factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_569049.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHD4, Q8LCR1
      Conserved Domains (1) summary
      pfam07896
      Location:78 → 108
      DUF1674; Protein of unknown function (DUF1674)
    Nucleotide Protein
    Heading Accession and Version

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