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    helicase associated (HA2) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831342, updated on 18-Sep-2024

    Summary

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    Official Full Name
    helicase associated (HA2) domain-containing protein
    Primary source
    TAIR:AT5G14900
    Locus tag
    AT5G14900
    See related
    Araport:AT5G14900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G14.20; F2G14_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (4822676..4823581, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene potassium transporter Neighboring gene NHL domain protein Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene Gibberellin-regulated family protein Neighboring gene senescence-associated gene 101

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    helicase associated (HA2) domain-containing protein
    NP_196994.1
    • helicase associated (HA2) domain-containing protein; FUNCTIONS IN: helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), Domain of unknown function DUF1605 (InterPro:IPR011709); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT3G62310.1); Has 5771 Blast hits to 5717 proteins in 1127 species: Archae - 0; Bacteria - 1821; Metazoa - 1566; Fungi - 1074; Plants - 520; Viruses - 0; Other Eukaryotes - 790 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4822676..4823581 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121494.1 → NP_196994.1  helicase associated (HA2) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196994.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4X1, A0A654G1A0, Q9LFR5
      Conserved Domains (1) summary
      COG1643
      Location:2 → 292
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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