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    ARFB1B ADP-ribosylation factor B1B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831569, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARFB1B
    Official Full Name
    ADP-ribosylation factor B1B
    Primary source
    TAIR:AT5G17060
    Locus tag
    AT5G17060
    See related
    Araport:AT5G17060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ADP-ribosylation factor B1B; ATARFB1B; F2K13.210; F2K13_210
    Summary
    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins.
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    Genomic context

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    See ARFB1B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (5610741..5613074)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene UDP-glucosyl transferase 78D2 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit-like protein Neighboring gene Cysteine proteinases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interaction specificity of Arabidopsis 14-3-3 proteins with phototropin receptor kinases. Sullivan S, et al. FEBS Lett, 2009 Jul 7. PMID 19524572
    2. Analysis of the small GTPase gene superfamily of Arabidopsis. Vernoud V, et al. Plant Physiol, 2003 Mar. PMID 12644670, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121712.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ADP-ribosylation factor B1B
    NP_197208.1
    • ADP-ribosylation factor B1B (ARFB1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor B1C (TAIR:AT3G03120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5610741..5613074
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343479.1 → NP_001331669.1  ADP-ribosylation factor B1B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKV6, A0A384LLN8, Q9LFJ7
      Conserved Domains (1) summary
      cd04150
      Location:18 → 176
      Arf1_5_like; ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

    2. NM_121712.4 → NP_197208.1  ADP-ribosylation factor B1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197208.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKV6, A0A384LLN8, Q9LFJ7
      Conserved Domains (1) summary
      cd04150
      Location:18 → 176
      Arf1_5_like; ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)
    Nucleotide Protein
    Heading Accession and Version

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