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    GHMP kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840081, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GHMP kinase family protein
    Primary source
    TAIR:AT1G31910
    Locus tag
    AT1G31910
    See related
    Araport:AT1G31910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5M6.9; F5M6_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (11456802..11463896)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein Neighboring gene NOD26-like intrinsic protein 3;1 Neighboring gene miscRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene extra-large GTP-binding protein 3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Peroxisomal localisation of the final steps of the mevalonic acid pathway in planta. Simkin AJ, et al. Planta, 2011 Nov. PMID 21655959
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001198195.1
    NM_102927.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in isopentenyl diphosphate biosynthetic process, mevalonate pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GHMP kinase family protein
    NP_001185124.1
    • GHMP kinase family protein; FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphomevalonate kinase, eukaryotic (InterPro:IPR005916), Phosphomevalonate kinase, ERG8 (InterPro:IPR016005), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721).
    NP_174473.1
    • GHMP kinase family protein; FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphomevalonate kinase, eukaryotic (InterPro:IPR005916), Phosphomevalonate kinase, ERG8 (InterPro:IPR016005), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 314 Blast hits to 303 proteins in 161 species: Archae - 24; Bacteria - 53; Metazoa - 0; Fungi - 150; Plants - 51; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11456802..11463896
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102927.3 → NP_174473.1  GHMP kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174473.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q681V6, Q682Q9, Q9C6T1
      UniProtKB/TrEMBL
      A0A654EJS0
      Conserved Domains (3) summary
      TIGR01219
      Location:4 → 492
      Pmev_kin_ERG8; phosphomevalonate kinase, ERG8-type, eukaryotic branch
      pfam08544
      Location:389 → 454
      GHMP_kinases_C; GHMP kinases C terminal
      cl02324
      Location:13 → 118
      DUF721; Protein of unknown function (DUF721)

    2. NM_001198195.1 → NP_001185124.1  GHMP kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185124.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJS0
      Conserved Domains (2) summary
      TIGR01219
      Location:4 → 417
      Pmev_kin_ERG8; phosphomevalonate kinase, ERG8-type, eukaryotic branch
      cl02324
      Location:13 → 118
      DUF721; Protein of unknown function (DUF721)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C6T1.1

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