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    RNA-binding KH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830741, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding KH domain-containing protein
    Primary source
    TAIR:AT5G08420
    Locus tag
    AT5G08420
    See related
    Araport:AT5G08420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L15.150; F8L15_150
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (2713347..2716328)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Radical SAM superfamily protein Neighboring gene ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 Neighboring gene SWIB/MDM2 and Plus-3 and GYF domain-containing protein Neighboring gene uncharacterized protein Neighboring gene zinc finger CCCH domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_120927.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding KH domain-containing protein
    NP_196459.1
    • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); Has 2263 Blast hits to 1799 proteins in 332 species: Archae - 149; Bacteria - 48; Metazoa - 634; Fungi - 309; Plants - 96; Viruses - 0; Other Eukaryotes - 1027 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2713347..2716328
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120927.3 → NP_196459.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196459.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIZ9, Q8LBT7, Q9FT93
      Conserved Domains (2) summary
      COG1094
      Location:51 → 214
      Krr1; rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and biogenesis]
      cd22394
      Location:139 → 232
      KH-I_KRR1_rpt2; second type I K homology (KH) RNA-binding domain found in KRR1 small subunit processome component and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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