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    zinc finger CCCH domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830744, updated on 18-Sep-2024

    Summary

    Official Full Name
    zinc finger CCCH domain protein
    Primary source
    TAIR:AT5G08450
    Locus tag
    AT5G08450
    See related
    Araport:AT5G08450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L15.180; F8L15_180; HDC1; Histone Deacetylation Complex 1; RXT3-like
    Summary
    Component of histone-deacetylase complexes. Interacts with HDA6 and HDA19 and facilitates histone deacetylation. Several salt-inducible genes are de-repressed in hdc1 mutants. Mutants are hypersensitive to ABA during germination, grow less and flower later than wildtype. HDC1-overexpressing plants display opposite phenotypes.
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (2727613..2732925, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNA-binding KH domain-containing protein Neighboring gene SWIB/MDM2 and Plus-3 and GYF domain-containing protein Neighboring gene uncharacterized protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene peroxisome 1

    Bibliography

    Interactions

    General gene information

    NM_001036780.1
    NM_120930.5
    NM_180702.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    part_of Sin3-type complex PubMed 
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    zinc finger CCCH domain protein
    NP_001031857.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).
    NP_196462.2
    • CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851033.1
    • CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2727613..2732925 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180702.3NP_851033.1  zinc finger CCCH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851033.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y2W4, A0A654FZG0, Q8RWV9
      Conserved Domains (2) summary
      TIGR01622
      Location:395536
      SF-CC1; splicing factor, CC1-like family
      cl02694
      Location:603685
      LCCL; LCCL domain
    2. NM_120930.5NP_196462.2  zinc finger CCCH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196462.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y2W4, A0A654FZG0, Q8RWV9
      Conserved Domains (2) summary
      TIGR01622
      Location:395536
      SF-CC1; splicing factor, CC1-like family
      cl02694
      Location:603685
      LCCL; LCCL domain
    3. NM_001036780.1NP_001031857.1  zinc finger CCCH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031857.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y2W4, A0A654FZG0, Q8RWV9
      Conserved Domains (2) summary
      TIGR01622
      Location:395536
      SF-CC1; splicing factor, CC1-like family
      cl02694
      Location:603685
      LCCL; LCCL domain
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