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    glycine-rich protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827482, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glycine-rich protein
    Primary source
    TAIR:AT4G17620
    Locus tag
    AT4G17620
    See related
    Araport:AT4G17620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4845W; FCAALL.74
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    13
    Sequence:
    Chromosome: 4; NC_003075.7 (9821874..9825039)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Trp Neighboring gene calcineurin B-like protein 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene casein kinase II beta chain 2 Neighboring gene Polyketide cyclase / dehydrase and lipid transport protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis DXO1 possesses deNADding and exonuclease activities and its mutation affects defense-related and photosynthetic gene expression. Pan S, et al. J Integr Plant Biol, 2020 Jul. PMID 31449356, Free PMC Article
    2. Arabidopsis DXO1 links RNA turnover and chloroplast function independently of its enzymatic activity. Kwasnik A, et al. Nucleic Acids Res, 2019 May 21. PMID 30949699, Free PMC Article
    3. A novel 5'-hydroxyl dinucleotide hydrolase activity for the DXO/Rai1 family of enzymes. Doamekpor SK, et al. Nucleic Acids Res, 2020 Jan 10. PMID 31777937, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036577.2
    NM_001203827.1
    NM_117871.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables 5'-3' RNA exonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables hydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA decapping IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycine-rich protein
    NP_001031654.1
    • glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RAI1 like (InterPro:IPR013961); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190756.1
    • glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RAI1 like (InterPro:IPR013961).
    NP_193498.2
    • glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RAI1 like (InterPro:IPR013961); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9821874..9825039
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117871.5 → NP_193498.2  glycine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193498.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY73
      UniProtKB/TrEMBL
      A0A178V536, A0A384KY78, A0A5S9XTE6, Q0WV80
      Conserved Domains (1) summary
      pfam08652
      Location:395 → 458
      RAI1; RAI1 like PD-(D/E)XK nuclease

    2. NM_001203827.1 → NP_001190756.1  glycine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190756.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XTE6, F4JP92
      Conserved Domains (1) summary
      pfam08652
      Location:387 → 450
      RAI1; RAI1 like PD-(D/E)XK nuclease

    3. NM_001036577.2 → NP_001031654.1  glycine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031654.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XTE6, F4JP90
      Conserved Domains (1) summary
      pfam08652
      Location:395 → 458
      RAI1; RAI1 like PD-(D/E)XK nuclease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RY73.1

    Gene LinkOut

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