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    Fumarylacetoacetate (FAA) hydrolase family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827276, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Fumarylacetoacetate (FAA) hydrolase family
    Primary source
    TAIR:AT4G15940
    Locus tag
    AT4G15940
    See related
    Araport:AT4G15940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4011W; FCAALL.203
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (9038193..9040370)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Nodulin MtN3 family protein Neighboring gene Dynein light chain type 1 family protein Neighboring gene RNA polymerase II, Rpb4, core protein Neighboring gene maternally expressed family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis mitochondrial proteome. Millar AH, et al. Plant Physiol, 2001 Dec. PMID 11743115, Free PMC Article
    2. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article
    3. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_117686.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding HDA PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    Fumarylacetoacetate (FAA) hydrolase family
    NP_193329.1
    • Fumarylacetoacetate (FAA) hydrolase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234); BEST Arabidopsis thaliana protein match is: Fumarylacetoacetate (FAA) hydrolase family (TAIR:AT3G16700.1); Has 10822 Blast hits to 10670 proteins in 1907 species: Archae - 249; Bacteria - 6730; Metazoa - 306; Fungi - 435; Plants - 75; Viruses - 0; Other Eukaryotes - 3027 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9038193..9040370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117686.5 → NP_193329.1  Fumarylacetoacetate (FAA) hydrolase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193329.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23443, Q93ZE5
      UniProtKB/TrEMBL
      A0A178V2T7, A0A5S9XUT0
      Conserved Domains (2) summary
      COG0179
      Location:15 → 209
      MhpD; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport and catabolism]
      pfam01557
      Location:17 → 214
      FAA_hydrolase; Fumarylacetoacetate (FAA) hydrolase family
    Nucleotide Protein
    Heading Accession and Version

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