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    PPPDE putative thiol peptidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827462, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PPPDE putative thiol peptidase family protein
    Primary source
    TAIR:AT4G17486
    Locus tag
    AT4G17486
    See related
    Araport:AT4G17486
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FCAALL.234
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (9749578..9751804, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ethylene responsive element binding factor 6 Neighboring gene ethylene responsive element binding factor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001160776.1
    NM_117853.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PPPDE putative thiol peptidase family protein
    NP_001154248.1
    • PPPDE putative thiol peptidase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G47310.1); Has 871 Blast hits to 871 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 234; Fungi - 89; Plants - 366; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
    NP_567528.2
    • PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G47310.1); Has 845 Blast hits to 845 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 76; Plants - 355; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9749578..9751804 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117853.4 → NP_567528.2  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567528.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93VG8, Q9FPJ0
      UniProtKB/TrEMBL
      A0A178UWK4, A0A5S9XTB8
      Conserved Domains (1) summary
      pfam05903
      Location:26 → 162
      Peptidase_C97; PPPDE putative peptidase domain

    2. NM_001160776.1 → NP_001154248.1  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154248.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JP67
      Conserved Domains (1) summary
      pfam05903
      Location:26 → 159
      Peptidase_C97; PPPDE putative peptidase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93VG8.1

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