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    RHC1A RING-H2 finger C1A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818680, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RHC1A
    Official Full Name
    RING-H2 finger C1A
    Primary source
    TAIR:AT2G40830
    Locus tag
    AT2G40830
    See related
    Araport:AT2G40830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RING-H2 finger C1A; RING-H2 FINGER PROTEIN RHC1A; T20B5.3; T20B5_3
    Summary
    Encodes a putative RING-H2 finger protein RHC1a.
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    Genomic context

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    See RHC1A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (17042623..17044915)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene ncRNA Neighboring gene stomatal closure actin-binding-like protein Neighboring gene disproportionating enzyme 2 Neighboring gene phosphoinositide 4-kinase gamma 1 Neighboring gene protein kinase family protein / protein phosphatase 2C (PP2C) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation. Nemoto K, et al. Nat Commun, 2017 Oct 17. PMID 29042542, Free PMC Article
    2. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. mediates ubiquitin-dependent degradation of GID1; interaction with GID1 inhibited by phosphorylation at Tyr321
      Title: Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001336872.1
    NM_129646.5
    NM_201922.3
    NM_201923.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of gibberellic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    RING-H2 finger C1A
    NP_565942.1
    • RING-H2 finger C1A (RHC1A); FUNCTIONS IN: zinc ion binding; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G56580.3); Has 10447 Blast hits to 10319 proteins in 284 species: Archae - 0; Bacteria - 14; Metazoa - 2825; Fungi - 987; Plants - 5086; Viruses - 20; Other Eukaryotes - 1515 (source: NCBI BLink).
    NP_973651.1
    • RING-H2 finger C1A (RHC1A); FUNCTIONS IN: zinc ion binding; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G56580.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973652.1
    • RING-H2 finger C1A (RHC1A); FUNCTIONS IN: zinc ion binding; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G56580.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17042623..17044915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201922.3 → NP_973651.1  RING-H2 finger C1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973651.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22197
      UniProtKB/TrEMBL
      A0A178VP26, A0A5S9X5Y3
      Conserved Domains (3) summary
      pfam12678
      Location:175 → 231
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:189 → 231
      zf-RING_2; Ring finger domain
      pfam14369
      Location:6 → 37
      zinc_ribbon_9; zinc-ribbon

    2. NM_001336872.1 → NP_001324188.1  RING-H2 finger C1A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22197
      UniProtKB/TrEMBL
      A0A178VP26, A0A5S9X5Y3

    3. NM_201923.4 → NP_973652.1  RING-H2 finger C1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973652.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22197
      UniProtKB/TrEMBL
      A0A178VP26, A0A5S9X5Y3
      Conserved Domains (3) summary
      pfam12678
      Location:175 → 231
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:189 → 231
      zf-RING_2; Ring finger domain
      pfam14369
      Location:6 → 37
      zinc_ribbon_9; zinc-ribbon

    4. NM_129646.5 → NP_565942.1  RING-H2 finger C1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565942.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22197
      UniProtKB/TrEMBL
      A0A178VP26, A0A5S9X5Y3
      Conserved Domains (3) summary
      pfam12678
      Location:175 → 231
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:189 → 231
      zf-RING_2; Ring finger domain
      pfam14369
      Location:6 → 37
      zinc_ribbon_9; zinc-ribbon
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22197.1

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