GH3.3 Auxin-responsive GH3 family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: GH3.3
Official Full Name: Auxin-responsive GH3 family protein
Primary source: TAIR:AT2G23170
Locus tag: AT2G23170
See related: Araport:AT2G23170
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T20D16.20; T20D16_20
Summary: encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.
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Genomic context

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See GH3.3 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 3

Sequence:: Chromosome: 2; NC_003071.7 (9863855..9866562, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

GH3.3 gene is required for fine-tuning adventitious root initiation in the Arabidopsis thaliana hypocotyl, and is acting by modulating jasmonic acid homeostasis
Title: Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis.

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

At2g23170_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
- UniSTS:510280

At2g23170_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
- UniSTS:510280

NM_127881.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables indole-3-acetic acid amido synthetase activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within intracellular auxin homeostasis	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Auxin-responsive GH3 family protein

NP_179898.1

GH3.3; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G37390.1); Has 1734 Blast hits to 1530 proteins in 236 species: Archae - 0; Bacteria - 610; Metazoa - 53; Fungi - 2; Plants - 676; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

9863855..9866562 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_127881.3 → NP_179898.1 Auxin-responsive GH3 family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_179898.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O22190

UniProtKB/TrEMBL

A0A178VZK7

Conserved Domains (2) summary

cl21606
Location:1 → 595

PLN02247; indole-3-acetic acid-amido synthetase

pfam03321
Location:25 → 564

GH3; GH3 auxin-responsive promoter