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    WRKY15 WRKY DNA-binding protein 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816864, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WRKY15
    Official Full Name
    WRKY DNA-binding protein 15
    Primary source
    TAIR:AT2G23320
    Locus tag
    AT2G23320
    See related
    Araport:AT2G23320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtWRKY15; T20D16.5; T20D16_5; WRKY DNA-binding protein 15
    Summary
    Encodes WRKY DNA-binding protein 15 (WRKY15).
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    Genomic context

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    See WRKY15 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (9924886..9926372)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Rer1 family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtWRKY15 perturbation abolishes the mitochondrial stress response that steers osmotic stress tolerance in Arabidopsis. Vanderauwera S, et al. Proc Natl Acad Sci U S A, 2012 Dec 4. PMID 23169634, Free PMC Article
    2. WRKY15 Suppresses Tracheary Element Differentiation Upstream of VND7 During Xylem Formation. Ge S, et al. Plant Cell, 2020 Jul. PMID 32327537, Free PMC Article
    3. WRKY group IId transcription factors interact with calmodulin. Park CY, et al. FEBS Lett, 2005 Feb 28. PMID 15733871
    4. AtWRKY40 and AtWRKY63 modulate the expression of stress-responsive nuclear genes encoding mitochondrial and chloroplast proteins. Van Aken O, et al. Plant Physiol, 2013 May. PMID 23509177, Free PMC Article
    5. A subcellular localization compendium of hydrogen peroxide-induced proteins. Inzé A, et al. Plant Cell Environ, 2012 Feb. PMID 21443605

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. WRKY15 Suppresses Tracheary Element Differentiation Upstream of VND7 During Xylem Formation.
      Title: WRKY15 Suppresses Tracheary Element Differentiation Upstream of VND7 During Xylem Formation.
    2. WRKY15 transcription factor modulates plant growth and salt/osmotic stress responses.
      Title: AtWRKY15 perturbation abolishes the mitochondrial stress response that steers osmotic stress tolerance in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_127896.3
    NM_201792.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables calmodulin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WRKY DNA-binding protein 15
    NP_179913.1
    • WRKY DNA-binding protein 15 (WRKY15); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 11 (TAIR:AT4G31550.1); Has 3350 Blast hits to 2896 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 3315; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    NP_973521.1
    • WRKY DNA-binding protein 15 (WRKY15); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 11 (TAIR:AT4G31550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9924886..9926372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127896.3 → NP_179913.1  WRKY DNA-binding protein 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179913.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22176
      UniProtKB/TrEMBL
      A0A178VVT3, A0A7G2EEE8
      Conserved Domains (2) summary
      smart00774
      Location:240 → 297
      WRKY; DNA binding domain
      pfam10533
      Location:200 → 237
      Plant_zn_clust; Plant zinc cluster domain

    2. NM_201792.1 → NP_973521.1  WRKY DNA-binding protein 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973521.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EEE8, F4ILJ1
      Conserved Domains (2) summary
      smart00774
      Location:240 → 260
      WRKY; DNA binding domain
      pfam10533
      Location:204 → 237
      Plant_zn_clust; Plant zinc cluster domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22176.1

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