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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001305203.2 → NP_001292132.1 zinc finger protein 90 homolog isoform 1
See identical proteins and their annotated locations for NP_001292132.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein (isoform 1).
- Source sequence(s)
-
AC009162, AC126773
- Consensus CDS
-
CCDS42183.1
- UniProtKB/Swiss-Prot
- B2RU00, B3KVE7, L7S2P3, Q49AD1, Q8TF47, Q96MQ6
- Related
- ENSP00000454418.2, ENST00000563169.7
- Conserved Domains (3) summary
-
- smart00349
Location:14 → 74
- KRAB; krueppel associated box
- COG5048
Location:336 → 632
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:555 → 575
- ZF_C2H2; C2H2 Zn finger [structural motif]
-
NM_001305204.2 → NP_001292133.1 zinc finger protein 90 homolog isoform 2
See identical proteins and their annotated locations for NP_001292133.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an alternate 3' terminal exon, compared to variant 1. It encodes isoform 2 which is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC009162, AC126773, AW135652
- Consensus CDS
-
CCDS76892.1
- UniProtKB/TrEMBL
-
I3L0X7
- Related
- ENSP00000480309.1, ENST00000611381.4
- Conserved Domains (1) summary
-
- smart00349
Location:14 → 74
- KRAB; krueppel associated box
-
NM_001305206.2 → NP_001292135.1 zinc finger protein 90 homolog isoform 3
See identical proteins and their annotated locations for NP_001292135.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and uses an alternate splice site in the 3' coding region, compared to variant 1. It encodes isoform 3 which is shorter and has a distinct C-terminus, compared to isoform 1. Both variants 4 and 5 encode the same protein (isoform 3).
- Source sequence(s)
-
AC009162, AC126773
- Consensus CDS
-
CCDS82003.1
- UniProtKB/TrEMBL
- H3BVC6, J3QKQ8
- Conserved Domains (1) summary
-
- smart00349
Location:14 → 74
- KRAB; krueppel associated box
-
NM_001305207.2 → NP_001292136.1 zinc finger protein 90 homolog isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR and uses an alternate splice site in the 3' coding region, compared to variant 1. It encodes isoform 4 which is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC009162, AC126773
- UniProtKB/TrEMBL
-
H3BVC6
- Conserved Domains (1) summary
-
- smart00349
Location:14 → 74
- KRAB; krueppel associated box
-
NM_001305208.2 → NP_001292137.1 zinc finger protein 90 homolog isoform 3
See identical proteins and their annotated locations for NP_001292137.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate splice site in the 3' coding region, compared to variant 1. It encodes isoform 3 which is shorter and has a distinct C-terminus, compared to isoform 1. Both variants 4 and 5 encode the same protein (isoform 3).
- Source sequence(s)
-
AC009162, AC126773
- Consensus CDS
-
CCDS82003.1
- UniProtKB/TrEMBL
- H3BVC6, J3QKQ8
- Related
- ENSP00000463193.1, ENST00000564323.5
- Conserved Domains (1) summary
-
- smart00349
Location:14 → 74
- KRAB; krueppel associated box
-
NM_133458.4 → NP_597715.2 zinc finger protein 90 homolog isoform 1
See identical proteins and their annotated locations for NP_597715.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest protein. Both variants 1 and 2 encode the same protein (isoform 1).
- Source sequence(s)
-
AC009162, AC126773
- Consensus CDS
-
CCDS42183.1
- UniProtKB/Swiss-Prot
- B2RU00, B3KVE7, L7S2P3, Q49AD1, Q8TF47, Q96MQ6
- Related
- ENSP00000460547.1, ENST00000570495.5
- Conserved Domains (3) summary
-
- smart00349
Location:14 → 74
- KRAB; krueppel associated box
- COG5048
Location:336 → 632
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:555 → 575
- ZF_C2H2; C2H2 Zn finger [structural motif]
RNA
-
NR_130976.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) uses an alternate splice sites in the 5'-most exon and an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC009162, AC126773
- Related
-
ENST00000564558.5
-
NR_130977.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) uses an alternate splice sites in the 5'-most exon and an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC009162, AC126773
-
NR_130978.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) uses an alternate splice sites in the 5'-most exon and an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC009162, AC126773
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
68533479..68576506
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017022952.3 → XP_016878441.1 zinc finger protein 90 homolog isoform X1
-
XM_024450159.2 → XP_024305927.1 zinc finger protein 90 homolog isoform X2
- UniProtKB/Swiss-Prot
- B2RU00, B3KVE7, L7S2P3, Q49AD1, Q8TF47, Q96MQ6
- Related
- ENSP00000381304.2, ENST00000398253.6
- Conserved Domains (3) summary
-
- smart00349
Location:14 → 74
- KRAB; krueppel associated box
- COG5048
Location:336 → 632
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:555 → 575
- ZF_C2H2; C2H2 Zn finger [structural motif]
-
XM_047433640.1 → XP_047289596.1 zinc finger protein 90 homolog isoform X3
- UniProtKB/TrEMBL
-
I3L0X7
-
XM_047433641.1 → XP_047289597.1 zinc finger protein 90 homolog isoform X3
- UniProtKB/TrEMBL
-
I3L0X7
-
XM_047433639.1 → XP_047289595.1 zinc finger protein 90 homolog isoform X3
- UniProtKB/TrEMBL
-
I3L0X7
-
XM_047433642.1 → XP_047289598.1 zinc finger protein 90 homolog isoform X4
- UniProtKB/TrEMBL
- H3BVC6, J3QKQ8
-
XM_005255804.3 → XP_005255861.1 zinc finger protein 90 homolog isoform X2
See identical proteins and their annotated locations for XP_005255861.1
- UniProtKB/Swiss-Prot
- B2RU00, B3KVE7, L7S2P3, Q49AD1, Q8TF47, Q96MQ6
- Conserved Domains (3) summary
-
- smart00349
Location:14 → 74
- KRAB; krueppel associated box
- COG5048
Location:336 → 632
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:555 → 575
- ZF_C2H2; C2H2 Zn finger [structural motif]
-
XM_047433643.1 → XP_047289599.1 zinc finger protein 90 homolog isoform X5
- UniProtKB/TrEMBL
-
H3BVC6
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
74323667..74372339
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054379640.1 → XP_054235615.1 zinc finger protein 90 homolog isoform X6
-
XM_054379637.1 → XP_054235612.1 zinc finger protein 90 homolog isoform X1
-
XM_054379639.1 → XP_054235614.1 zinc finger protein 90 homolog isoform X2
- UniProtKB/Swiss-Prot
- B2RU00, B3KVE7, L7S2P3, Q49AD1, Q8TF47, Q96MQ6
-
XM_054379642.1 → XP_054235617.1 zinc finger protein 90 homolog isoform X3
- UniProtKB/TrEMBL
-
I3L0X7
-
XM_054379643.1 → XP_054235618.1 zinc finger protein 90 homolog isoform X3
- UniProtKB/TrEMBL
-
I3L0X7
-
XM_054379641.1 → XP_054235616.1 zinc finger protein 90 homolog isoform X3
- UniProtKB/TrEMBL
-
I3L0X7
-
XM_054379644.1 → XP_054235619.1 zinc finger protein 90 homolog isoform X4
- UniProtKB/TrEMBL
- H3BVC6, J3QKQ8
-
XM_054379638.1 → XP_054235613.1 zinc finger protein 90 homolog isoform X2
- UniProtKB/Swiss-Prot
- B2RU00, B3KVE7, L7S2P3, Q49AD1, Q8TF47, Q96MQ6
-
XM_054379645.1 → XP_054235620.1 zinc finger protein 90 homolog isoform X5
- UniProtKB/TrEMBL
-
H3BVC6