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    PRKAG2-AS1 PRKAG2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100505483, updated on 17-Sep-2024

    Summary

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    Official Symbol
    PRKAG2-AS1provided by HGNC
    Official Full Name
    PRKAG2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40468
    See related
    AllianceGenome:HGNC:40468
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in brain (RPKM 9.3), fat (RPKM 6.1) and 24 other tissues See more
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    Genomic context

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    See PRKAG2-AS1 in Genome Data Viewer
    Location:
    7q36.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (151877042..151879223)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (153049869..153052050)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (151574127..151576308)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26866 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:151216232-151216661 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18819 Neighboring gene Ras homolog, mTORC1 binding Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18820 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18821 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26867 Neighboring gene MPRA-validated peak6846 silencer Neighboring gene eukaryotic translation termination factor 1 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 3106 Neighboring gene MPRA-validated peak6847 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151289181-151289681 Neighboring gene protein kinase AMP-activated non-catalytic subunit gamma 2 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:151300425-151300977 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18822 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151377353-151378020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151379739-151380324 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151380909-151381493 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151380325-151380908 Neighboring gene VISTA enhancer hs2193 Neighboring gene VISTA enhancer hs2194 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:151401658-151401849 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151417955-151418476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151421977-151422477 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:151423711-151424574 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26869 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:151432471-151433128 Neighboring gene VISTA enhancer hs2199 Neighboring gene VISTA enhancer hs2200 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18825 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151481003-151481892 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18824 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151481893-151482782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151487603-151488104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151491193-151492090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151493035-151493617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151493618-151494199 Neighboring gene PRKAG2 antisense RNA 2 Neighboring gene MPRA-validated peak6848 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151535109-151535690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26871 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151551046-151551566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151551567-151552087 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26872 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18827 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18826 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151584831-151585642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151585643-151586454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:151587423-151587923 Neighboring gene MPRA-validated peak6849 silencer Neighboring gene RNA, U6 small nuclear 604, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26873 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26874 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26875 Neighboring gene uncharacterized LOC105375570 Neighboring gene MPRA-validated peak6850 silencer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Identification of long non-coding RNAs in advanced prostate cancer associated with androgen receptor splicing factors. Takayama KI, et al. Commun Biol, 2020 Jul 23. PMID 32704143, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Identification of long non-coding RNAs in advanced prostate cancer associated with androgen receptor splicing factors.
      Title: Identification of long non-coding RNAs in advanced prostate cancer associated with androgen receptor splicing factors.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • PRKAG2 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038926.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC074257, BC131560, CA419137

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      151877042..151879223
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      153049869..153052050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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