NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_002636.5 → NP_002627.2 PHD finger protein 1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1), uses an alternate splice site and lacks an alternate exon in the 3' coding region resulting in a frameshift, compared to variant 2. The resulting isoform (a) has a shorter and distinct C-terminus, compared to isoform b.
- Source sequence(s)
-
AL662799
- Consensus CDS
-
CCDS4778.1
- UniProtKB/TrEMBL
- A0A140VJR4, A0A1U9X8A3
- Related
- ENSP00000363636.3, ENST00000374512.7
- Conserved Domains (3) summary
-
- cd15500
Location:89 → 139
- PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
- cd15582
Location:188 → 239
- PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
- pfam18104
Location:34 → 69
- Tudor_2; Jumonji domain-containing protein 2A Tudor domain
-
NM_024165.3 → NP_077084.2 PHD finger protein 1 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2), also called variant PHF2, represents the longest transcript and encodes the longer isoform (b).
- Source sequence(s)
-
AL662799
- Consensus CDS
-
CCDS4777.1
- UniProtKB/Swiss-Prot
- B1AZX2, B1AZX3, O43189, O60929, Q5SU07, Q5SU08, Q96KM7
- Related
- ENSP00000363640.3, ENST00000374516.8
- Conserved Domains (4) summary
-
- cd15500
Location:89 → 139
- PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
- cd15582
Location:188 → 239
- PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
- pfam14061
Location:539 → 565
- Mtf2_C; Polycomb-like MTF2 factor 2
- pfam18104
Location:34 → 69
- Tudor_2; Jumonji domain-containing protein 2A Tudor domain
RNA
-
NR_027692.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site, compared to variant 2. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 2, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL662799
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
33410412..33416439
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047418879.1 → XP_047274835.1 PHD finger protein 1 isoform X6
- UniProtKB/Swiss-Prot
- B1AZX2, B1AZX3, O43189, O60929, Q5SU07, Q5SU08, Q96KM7
-
XM_011514665.2 → XP_011512967.2 PHD finger protein 1 isoform X4
-
XM_011514666.2 → XP_011512968.2 PHD finger protein 1 isoform X5
-
XM_011514662.2 → XP_011512964.2 PHD finger protein 1 isoform X1
-
XM_011514663.2 → XP_011512965.2 PHD finger protein 1 isoform X2
-
XM_011514669.2 → XP_011512971.2 PHD finger protein 1 isoform X7
- UniProtKB/TrEMBL
-
A0A140VJR4
-
XM_011514664.2 → XP_011512966.2 PHD finger protein 1 isoform X3
-
XM_011514670.3 → XP_011512972.2 PHD finger protein 1 isoform X8
- UniProtKB/TrEMBL
-
E9PQT8
-
XM_047418881.1 → XP_047274837.1 PHD finger protein 1 isoform X9
RNA
-
XR_007059274.1 RNA Sequence
-
XR_926250.2 RNA Sequence
Reference GRCh38.p14 ALT_REF_LOCI_7
Genomic
-
NT_167249.2 Reference GRCh38.p14 ALT_REF_LOCI_7
- Range
-
4858494..4865164
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054331354.1 → XP_054187329.1 PHD finger protein 1 isoform X6
-
XM_054331356.1 → XP_054187331.1 PHD finger protein 1 isoform X11
-
XM_054331362.1 → XP_054187337.1 PHD finger protein 1 isoform X13
-
XM_054331358.1 → XP_054187333.1 PHD finger protein 1 isoform X12
-
XM_054331353.1 → XP_054187328.1 PHD finger protein 1 isoform X5
-
XM_054331360.1 → XP_054187335.1 PHD finger protein 1 isoform X8
- UniProtKB/TrEMBL
-
B4DI51
-
XM_054331352.1 → XP_054187327.1 PHD finger protein 1 isoform X4
-
XM_054331351.1 → XP_054187326.1 PHD finger protein 1 isoform X10
-
XM_054331348.1 → XP_054187323.1 PHD finger protein 1 isoform X1
-
XM_054331349.1 → XP_054187324.1 PHD finger protein 1 isoform X2
-
XM_054331359.1 → XP_054187334.1 PHD finger protein 1 isoform X7
- UniProtKB/TrEMBL
-
A0A140VJR4
-
XM_054331350.1 → XP_054187325.1 PHD finger protein 1 isoform X3
-
XM_054331361.1 → XP_054187336.1 PHD finger protein 1 isoform X13
-
XM_054331355.1 → XP_054187330.1 PHD finger protein 1 isoform X11
-
XM_054331357.1 → XP_054187332.1 PHD finger protein 1 isoform X12
-
XM_054331364.1 → XP_054187339.1 PHD finger protein 1 isoform X9
-
XM_054331363.1 → XP_054187338.1 PHD finger protein 1 isoform X14
RNA
-
XR_008485716.1 RNA Sequence
-
XR_008485717.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
33231158..33237801
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054355619.1 → XP_054211594.1 PHD finger protein 1 isoform X6
- UniProtKB/Swiss-Prot
- B1AZX2, B1AZX3, O43189, O60929, Q5SU07, Q5SU08, Q96KM7
-
XM_054355621.1 → XP_054211596.1 PHD finger protein 1 isoform X16
-
XM_054355627.1 → XP_054211602.1 PHD finger protein 1 isoform X18
-
XM_054355623.1 → XP_054211598.1 PHD finger protein 1 isoform X17
-
XM_054355618.1 → XP_054211593.1 PHD finger protein 1 isoform X5
-
XM_054355625.1 → XP_054211600.1 PHD finger protein 1 isoform X8
- UniProtKB/TrEMBL
-
E9PQT8
-
XM_054355617.1 → XP_054211592.1 PHD finger protein 1 isoform X4
-
XM_054355616.1 → XP_054211591.1 PHD finger protein 1 isoform X15
-
XM_054355613.1 → XP_054211588.1 PHD finger protein 1 isoform X1
-
XM_054355614.1 → XP_054211589.1 PHD finger protein 1 isoform X2
-
XM_054355624.1 → XP_054211599.1 PHD finger protein 1 isoform X7
- UniProtKB/TrEMBL
-
A0A140VJR4
-
XM_054355615.1 → XP_054211590.1 PHD finger protein 1 isoform X3
-
XM_054355626.1 → XP_054211601.1 PHD finger protein 1 isoform X18
-
XM_054355620.1 → XP_054211595.1 PHD finger protein 1 isoform X16
-
XM_054355622.1 → XP_054211597.1 PHD finger protein 1 isoform X17
-
XM_054355629.1 → XP_054211604.1 PHD finger protein 1 isoform X9
-
XM_054355628.1 → XP_054211603.1 PHD finger protein 1 isoform X19
RNA
-
XR_008487345.1 RNA Sequence
-
XR_008487346.1 RNA Sequence