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    LOC101927896 uncharacterized LOC101927896 [ Homo sapiens (human) ]

    Gene ID: 101927896, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101927896
    Gene description
    uncharacterized LOC101927896
    See related
    Ensembl:ENSG00000235726
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101927896 in Genome Data Viewer
    Location:
    2q37.2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (234793178..234888889, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (235282288..235377949, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:235596500-235597125 Neighboring gene Sharpr-MPRA regulatory region 2610 Neighboring gene long intergenic non-protein coding RNA 1173 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235602982-235604181 Neighboring gene NANOG hESC enhancer GRCh37_chr2:235619073-235619654 Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 10 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235673486-235674685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235681449-235681948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235680947-235681448 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235742667-235743866 Neighboring gene Sharpr-MPRA regulatory region 15004 Neighboring gene uncharacterized LOC105373937 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:235810653-235811216 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:235840873-235841418 Neighboring gene uncharacterized LOC105373938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235843604-235844104

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Speek M. Mol Cell Biol, 2001 Mar. PMID 11238933, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      234793178..234888889 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002959457.2 RNA Sequence

    2. XR_007088126.1 RNA Sequence

    3. XR_007088125.1 RNA Sequence

    4. XR_007088127.1 RNA Sequence

      Related
      ENST00000825589.1

    5. XR_007088128.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      235282288..235377949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072937.1 RNA Sequence

    2. XR_007072936.1 RNA Sequence

    3. XR_007072939.1 RNA Sequence

    4. XR_007072938.1 RNA Sequence

    5. XR_007072940.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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