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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001168339.2 → NP_001161811.2 tetratricopeptide repeat protein 39B isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
- Source sequence(s)
-
AL591393
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
- Conserved Domains (1) summary
-
- pfam13424
Location:526 → 590
- TPR_12; Tetratricopeptide repeat
-
NM_001168340.2 → NP_001161812.2 tetratricopeptide repeat protein 39B isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has multiple differences in the central coding region but maintains the reading frame, compared to variant 1. This results in a shorter protein (isoform 3), compared to isoform 1.
- Source sequence(s)
-
AL591393
- Consensus CDS
-
CCDS55296.2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
- UniProtKB/TrEMBL
-
A0A8V8NCV2
- Related
- ENSP00000370231.5, ENST00000380850.9
- Conserved Domains (1) summary
-
- pfam13424
Location:515 → 579
- TPR_12; Tetratricopeptide repeat
-
NM_001168341.2 → NP_001161813.2 tetratricopeptide repeat protein 39B isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 4, which is shorter than isoform 1.
- Source sequence(s)
-
AL591393
- Consensus CDS
-
CCDS55295.2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
- UniProtKB/TrEMBL
-
A0A8V8N5K5
- Related
- ENSP00000297615.6, ENST00000297615.10
- Conserved Domains (1) summary
-
- pfam13424
Location:459 → 523
- TPR_12; Tetratricopeptide repeat
-
NM_001168342.2 → NP_001161814.1 tetratricopeptide repeat protein 39B isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at an in-frame downstream AUG and result an isoform (5) with a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AI473911, AK301427, AK310271, AL591393, BC142985, BX105862, DT217817
- Consensus CDS
-
CCDS55294.1
- UniProtKB/Swiss-Prot
-
Q5VTQ0
- Related
- ENSP00000423392.1, ENST00000507993.5
- Conserved Domains (2) summary
-
- pfam10300
Location:1 → 433
- DUF3808; Protein of unknown function (DUF3808)
- pfam13424
Location:429 → 493
- TPR_12; Tetratricopeptide repeat
-
NM_152574.3 → NP_689787.3 tetratricopeptide repeat protein 39B isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AL591393
- Consensus CDS
-
CCDS6477.3
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
- UniProtKB/TrEMBL
-
A0A8V8PNE1
- Related
- ENSP00000422496.2, ENST00000512701.7
- Conserved Domains (2) summary
-
- pfam13424
Location:528 → 592
- TPR_12; Tetratricopeptide repeat
- pfam10300
Location:76 → 532
- DUF3808; Protein of unknown function (DUF3808)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
15163622..15307216 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047422829.1 → XP_047278785.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
-
XM_024447422.2 → XP_024303190.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
- Conserved Domains (2) summary
-
- pfam13424
Location:497 → 561
- TPR_12; Tetratricopeptide repeat
- pfam10300
Location:45 → 501
- DUF3808; Protein of unknown function (DUF3808)
-
XM_047422828.1 → XP_047278784.1 tetratricopeptide repeat protein 39B isoform X1
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
-
XM_017014312.2 → XP_016869801.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
- Conserved Domains (2) summary
-
- pfam13424
Location:497 → 561
- TPR_12; Tetratricopeptide repeat
- pfam10300
Location:45 → 501
- DUF3808; Protein of unknown function (DUF3808)
-
XM_024447423.2 → XP_024303191.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
- Conserved Domains (2) summary
-
- pfam13424
Location:497 → 561
- TPR_12; Tetratricopeptide repeat
- pfam10300
Location:45 → 501
- DUF3808; Protein of unknown function (DUF3808)
-
XM_011517732.3 → XP_011516034.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
- Conserved Domains (2) summary
-
- pfam13424
Location:497 → 561
- TPR_12; Tetratricopeptide repeat
- pfam10300
Location:45 → 501
- DUF3808; Protein of unknown function (DUF3808)
-
XM_024447424.2 → XP_024303192.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
- Conserved Domains (2) summary
-
- pfam13424
Location:497 → 561
- TPR_12; Tetratricopeptide repeat
- pfam10300
Location:45 → 501
- DUF3808; Protein of unknown function (DUF3808)
-
XM_024447425.2 → XP_024303193.1 tetratricopeptide repeat protein 39B isoform X4
- Related
- ENSP00000426539.1, ENST00000507285.5
- Conserved Domains (2) summary
-
- pfam10300
Location:1 → 433
- DUF3808; Protein of unknown function (DUF3808)
- pfam13424
Location:429 → 493
- TPR_12; Tetratricopeptide repeat
-
XM_047422831.1 → XP_047278787.1 tetratricopeptide repeat protein 39B isoform X3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
15175161..15318914 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054362076.1 → XP_054218051.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
-
XM_054362073.1 → XP_054218048.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
-
XM_054362071.1 → XP_054218046.1 tetratricopeptide repeat protein 39B isoform X1
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
-
XM_054362074.1 → XP_054218049.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
-
XM_054362075.1 → XP_054218050.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
-
XM_054362072.1 → XP_054218047.1 tetratricopeptide repeat protein 39B isoform X2
- UniProtKB/Swiss-Prot
- A5PLN1, B4DQ10, B4DQX4, B4DW93, Q5VTQ0, Q8IVR7, Q8IXZ6, Q8N267
-
XM_054362078.1 → XP_054218053.1 tetratricopeptide repeat protein 39B isoform X4
-
XM_054362077.1 → XP_054218052.1 tetratricopeptide repeat protein 39B isoform X3