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    PGY1 Ribosomal protein L1p/L10e family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817299, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PGY1
    Official Full Name
    Ribosomal protein L1p/L10e family
    Primary source
    TAIR:AT2G27530
    Locus tag
    AT2G27530
    See related
    Araport:AT2G27530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10A12.22; PIGGYBACK1
    Summary
    Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
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    Genomic context

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    See PGY1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (11763217..11764935, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ferredoxin 3 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ribosomal protein L10A family protein Neighboring gene F-box associated ubiquitination effector family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Pinon V, et al. Development, 2008 Apr. PMID 18305008
    2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    3. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    5. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_128313.7
    NM_179773.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within adaxial/abaxial pattern specification IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within post-embryonic plant organ development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L1p/L10e family
    NP_565654.1
    • PIGGYBACK1 (PGY1); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: adaxial/abaxial pattern formation, post-embryonic organ development, translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT1G08360.1); Has 3883 Blast hits to 3882 proteins in 1276 species: Archae - 280; Bacteria - 1809; Metazoa - 457; Fungi - 188; Plants - 511; Viruses - 0; Other Eukaryotes - 638 (source: NCBI BLink).
    NP_850104.1
    • PIGGYBACK1 (PGY1); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: adaxial/abaxial pattern formation, post-embryonic organ development, translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT1G08360.1); Has 3883 Blast hits to 3882 proteins in 1276 species: Archae - 280; Bacteria - 1809; Metazoa - 457; Fungi - 188; Plants - 511; Viruses - 0; Other Eukaryotes - 638 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11763217..11764935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128313.7 → NP_565654.1  Ribosomal protein L1p/L10e family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565654.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P53029, P59230, Q9C5M4, Q9SLF8
      UniProtKB/TrEMBL
      A0A178W1V2, A0A5S9X1R2
      Conserved Domains (1) summary
      cl00322
      Location:1 → 216
      Ribosomal_L1; Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds ...

    2. NM_179773.6 → NP_850104.1  Ribosomal protein L1p/L10e family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850104.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P53029, P59230, Q9C5M4, Q9SLF8
      UniProtKB/TrEMBL
      A0A178W1V2, A0A5S9X1R2
      Conserved Domains (1) summary
      cl00322
      Location:1 → 216
      Ribosomal_L1; Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P59230.1

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