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    YUC9 YUCCA 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837024, updated on 18-Sep-2024

    Summary

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    Official Symbol
    YUC9
    Official Full Name
    YUCCA 9
    Primary source
    TAIR:AT1G04180
    Locus tag
    AT1G04180
    See related
    Araport:AT1G04180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D22.5; F20D22_5; YUCCA 9
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    Genomic context

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    See YUC9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (1104493..1106241)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myosin XI B Neighboring gene eukaryotic translation initiation factor 2 gamma subunit Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene dyggve-melchior-clausen syndrome protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YUCCA8 and YUCCA9 overexpression reveals a link between auxin signaling and lignification through the induction of ethylene biosynthesis. Hentrich M, et al. Plant Signal Behav, 2013 Nov. PMID 24022251, Free PMC Article
    2. The jasmonic acid signaling pathway is linked to auxin homeostasis through the modulation of YUCCA8 and YUCCA9 gene expression. Hentrich M, et al. Plant J, 2013 May. PMID 23425284, Free PMC Article
    3. The Circadian Clock Influences the Long-Term Water Use Efficiency of Arabidopsis. Simon NML, et al. Plant Physiol, 2020 May. PMID 32179629, Free PMC Article
    4. Coordination of matrix attachment and ATP-dependent chromatin remodeling regulate auxin biosynthesis and Arabidopsis hypocotyl elongation. Lee K, et al. PLoS One, 2017. PMID 28746399, Free PMC Article
    5. Local Transcriptional Control of YUCCA Regulates Auxin Promoted Root-Growth Inhibition in Response to Aluminium Stress in Arabidopsis. Liu G, et al. PLoS Genet, 2016 Oct. PMID 27716807, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that the light-inducible AHL proteins ESCAROLA (ESC)/AHL27 and SUPPRESSOR OF PHYTOCHROME B-4 #3 (SOB3)/AHL29 bind directly to an scaffold/matrix attachment regions (S/MARs) region of the YUCCA 9 (YUC9) promoter and suppress its expression to inhibit hypocotyl growth in light-grown seedlings.
      Title: Coordination of matrix attachment and ATP-dependent chromatin remodeling regulate auxin biosynthesis and Arabidopsis hypocotyl elongation.
    2. ethylene-insensitive 3 (EIN3) is involved into the direct regulation of YUC9 transcription in this process. Furthermore, we demonstrated that PHYTOCHROME INTERACTING FACTOR4 (PIF4) functions as a transcriptional activator for YUC5/8/9.
      Title: Local Transcriptional Control of YUCCA Regulates Auxin Promoted Root-Growth Inhibition in Response to Aluminium Stress in Arabidopsis.
    3. the overexpression of YUC8 as well as YUC9 led to strong lignification of plant aerial tissues.
      Title: YUCCA8 and YUCCA9 overexpression reveals a link between auxin signaling and lignification through the induction of ethylene biosynthesis.
    4. Both YUC8 and YUC9 are involved in auxin biosynthesis. The roots of the analyzed yuc knockout mutants displayed a reduced response to methyl jasmonate (MeJA).
      Title: The jasmonic acid signaling pathway is linked to auxin homeostasis through the modulation of YUCCA8 and YUCCA9 gene expression.
    Submit: New GeneRIF Correction

    General gene information

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    NM_100299.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N,N-dimethylaniline monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables indole-3-pyruvate monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in auxin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to ethylene IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to herbicide IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within somatic embryogenesis IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    YUCCA 9
    NP_171914.1
    • YUCCA 9 (YUC9); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11871 Blast hits to 11852 proteins in 1762 species: Archae - 17; Bacteria - 7034; Metazoa - 796; Fungi - 1508; Plants - 659; Viruses - 0; Other Eukaryotes - 1857 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1104493..1106241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100299.2 → NP_171914.1  YUCCA 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171914.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64489
      UniProtKB/TrEMBL
      A0A178WB22, A0A5S9SID4, A0A654E6M0
      Conserved Domains (1) summary
      COG2072
      Location:26 → 346
      CzcO; Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64489.1

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