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    TRAF-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839551, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TRAF-like superfamily protein
    Primary source
    TAIR:AT1G04300
    Locus tag
    AT1G04300
    See related
    Araport:AT1G04300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19P19.26; F19P19_26
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (1148564..1154667, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Thioesterase superfamily protein Neighboring gene ncRNA Neighboring gene ethylene response sensor 2 Neighboring gene tRNA-Gly

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant TRAF Proteins Regulate NLR Immune Receptor Turnover. Huang S, et al. Cell Host Microbe, 2016 Feb 10. PMID 26867179
    2. TRAF Family Proteins Regulate Autophagy Dynamics by Modulating AUTOPHAGY PROTEIN6 Stability in Arabidopsis. Qi H, et al. Plant Cell, 2017 Apr. PMID 28351989, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001083985.1
    NM_001083986.1
    NM_001197978.1
    NM_001331473.1
    NM_001331474.1
    NM_100311.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within autophagosome organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within innate immune response IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with autophagosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TRAF-like superfamily protein
    NP_001077454.1
    • TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2); Has 15857 Blast hits to 10581 proteins in 945 species: Archae - 20; Bacteria - 1945; Metazoa - 5107; Fungi - 2063; Plants - 631; Viruses - 112; Other Eukaryotes - 5979 (source: NCBI BLink).
    NP_001077455.1
    • TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2); Has 16478 Blast hits to 11071 proteins in 944 species: Archae - 20; Bacteria - 1905; Metazoa - 5111; Fungi - 2223; Plants - 1025; Viruses - 104; Other Eukaryotes - 6090 (source: NCBI BLink).
    NP_001184907.1
    • TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2).
    NP_171926.3
    • TRAF-like superfamily protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2); Has 16577 Blast hits to 11240 proteins in 949 species: Archae - 20; Bacteria - 1945; Metazoa - 5204; Fungi - 2178; Plants - 1117; Viruses - 112; Other Eukaryotes - 6001 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1148564..1154667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100311.4 → NP_171926.3  TRAF-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171926.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9SIB7, A8MR11
      Conserved Domains (2) summary
      cd00121
      Location:68 → 191
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      TIGR00927
      Location:638 → 836
      2A1904; K+-dependent Na+/Ca+ exchanger

    2. NM_001197978.1 → NP_001184907.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184907.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9SIB7, F4I476
      Conserved Domains (1) summary
      cd00121
      Location:60 → 172
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    3. NM_001331473.1 → NP_001321566.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEG8, A0A1P8ARC9

    4. NM_001083986.1 → NP_001077455.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077455.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQL1, F4I479, P93826, P93827, Q0WNI3
      UniProtKB/TrEMBL
      A0A5S9SIB7
      Conserved Domains (2) summary
      cd00121
      Location:68 → 199
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cl26464
      Location:580 → 898
      Atrophin-1; Atrophin-1 family

    5. NM_001083985.1 → NP_001077454.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077454.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEG8
      Conserved Domains (1) summary
      cl02446
      Location:47 → 115
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    6. NM_001331474.1 → NP_001321565.1  TRAF-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDY3, A0A1P8AR94
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8MQL1.1

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