U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    hypothetical protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837056, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    hypothetical protein (DUF295)
    Primary source
    TAIR:AT1G05540
    Locus tag
    AT1G05540
    See related
    Araport:AT1G05540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T25N20.19
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (1639223..1640879)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene naphthalene 1,2-dioxygenase subunit alpha (DUF1264) Neighboring gene Sec23/Sec24 protein transport family protein Neighboring gene UDP-glucosyl transferase 75B2 Neighboring gene hypothetical protein (DUF295) Neighboring gene ncRNA Neighboring gene UDP-glucosyltransferase 75B1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_100433.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    hypothetical protein (DUF295)
    NP_172045.1
    • Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G30160.2); Has 218 Blast hits to 208 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1639223..1640879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331552.1 → NP_001320743.1  hypothetical protein (DUF295) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJ75, A0A1P8ANS4, A0A384LIC6

    2. NM_100433.4 → NP_172045.1  hypothetical protein (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172045.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJ68, A0A5S9SSX7, Q9ZVY4
      Conserved Domains (1) summary
      pfam03478
      Location:294 → 337
      DUF295; Protein of unknown function (DUF295)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.