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    Calcium-binding EF hand family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838765, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcium-binding EF hand family protein
    Primary source
    TAIR:AT1G21630
    Locus tag
    AT1G21630
    See related
    Araport:AT1G21630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8K7.4; F8K7_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (7581008..7588153)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene plastid transcriptionally active 6 Neighboring gene wound-responsive family protein Neighboring gene pumilio 20 Neighboring gene NAD kinase 2 Neighboring gene Preprotein translocase SecA family protein Neighboring gene zinc ion binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants. Gadeyne A, et al. Cell, 2014 Feb 13. PMID 24529374
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198127.2
    NM_001332524.1
    NM_001332525.1
    NM_102012.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Calcium-binding EF hand family protein
    NP_001185056.1
    • Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1).
    NP_173582.2
    • Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G20760.1); Has 21780 Blast hits to 9779 proteins in 834 species: Archae - 101; Bacteria - 6804; Metazoa - 6519; Fungi - 2817; Plants - 623; Viruses - 89; Other Eukaryotes - 4827 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7581008..7588153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102012.3 → NP_173582.2  Calcium-binding EF hand family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173582.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKM1, A0A654ECX6, F4HY33
      Conserved Domains (5) summary
      PTZ00121
      Location:579 → 899
      PTZ00121; MAEBL; Provisional
      smart00027
      Location:416 → 509
      EH; Eps15 homology domain
      PHA03247
      Location:94 → 426
      PHA03247; large tegument protein UL36; Provisional
      cd00052
      Location:13 → 79
      EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
      TIGR02169
      Location:578 → 738
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    2. NM_001332524.1 → NP_001321142.1  Calcium-binding EF hand family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ08, A0A654ECX6

    3. NM_001198127.2 → NP_001185056.1  Calcium-binding EF hand family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185056.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ECX6, F4HY32
      Conserved Domains (4) summary
      smart00027
      Location:416 → 509
      EH; Eps15 homology domain
      cd00052
      Location:13 → 79
      EH; Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A ...
      pfam03153
      Location:95 → 263
      TFIIA; Transcription factor IIA, alpha/beta subunit
      pfam13499
      Location:17 → 71
      EF-hand_7; EF-hand domain pair

    4. NM_001332525.1 → NP_001321141.1  Calcium-binding EF hand family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APZ6, A0A654ECX6
    Nucleotide Protein
    Heading Accession and Version

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