U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Transmembrane Fragile-X-F-associated protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838427, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Transmembrane Fragile-X-F-associated protein
    Primary source
    TAIR:AT1G18470
    Locus tag
    AT1G18470
    See related
    Araport:AT1G18470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15H18.5; F15H18_5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (6355695..6360344, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Peptidyl-tRNA hydrolase family protein Neighboring gene actin-related protein 4 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene uncharacterized protein Neighboring gene 2-aminoethanethiol dioxygenase, putative (DUF1637)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. AtPPRT3, a novel E3 ubiquitin ligase, plays a positive role in ABA signaling. Liu Y, et al. Plant Cell Rep, 2020 Nov. PMID 32757028
    2. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtPPRT3, a novel E3 ubiquitin ligase, plays a positive role in ABA signaling.
      Title: AtPPRT3, a novel E3 ubiquitin ligase, plays a positive role in ABA signaling.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_101704.5
    NM_202128.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Transmembrane Fragile-X-F-associated protein
    NP_564052.1
    • Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 2617 Blast hits to 2612 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 1517; Fungi - 24; Plants - 500; Viruses - 234; Other Eukaryotes - 342 (source: NCBI BLink).
    NP_973857.1
    • Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6355695..6360344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101704.5 → NP_564052.1  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564052.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLV3, A0A7G2DRK5, Q8LBF1
      Conserved Domains (3) summary
      cd00162
      Location:420 → 454
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam10269
      Location:28 → 292
      Tmemb_185A; Transmembrane Fragile-X-F protein
      pfam13920
      Location:416 → 461
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    2. NM_202128.1 → NP_973857.1  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973857.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0WQL8
      Conserved Domains (1) summary
      pfam10269
      Location:28 → 292
      Tmemb_185A; Transmembrane Fragile-X-F protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools