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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824742, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT3G55760
    Locus tag
    AT3G55760
    See related
    Araport:AT3G55760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (20700314..20703130)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene proline transporter 2 Neighboring gene Ribosomal protein L35Ae family protein Neighboring gene GATA type zinc finger transcription factor family protein Neighboring gene Glycosyl hydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Glucan, water dikinase activity stimulates breakdown of starch granules by plastidial beta-amylases. Edner C, et al. Plant Physiol, 2007 Sep. PMID 17631522, Free PMC Article
    2. LIKE EARLY STARVATION 1 alters the glucan structures at the starch granule surface and thereby influences the action of both starch-synthesizing and starch-degrading enzymes. Singh A, et al. Plant J, 2022 Aug. PMID 35665549
    3. The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves. Feike D, et al. Plant Cell, 2016 Jun. PMID 27207856, Free PMC Article
    4. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    5. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203169.1
    NM_180377.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables starch binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of starch metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within starch metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in starch grain IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001190098.1
    • unknown protein; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2).
    NP_191135.1
    • unknown protein; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2); Has 176 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 19; Fungi - 9; Plants - 81; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
    NP_850708.1
    • unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2); Has 176 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 19; Fungi - 9; Plants - 81; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20700314..20703130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115434.3 → NP_191135.1  uncharacterized protein AT3G55760 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191135.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VES7, Q5EAH9, Q8L722, Q9M048
      UniProtKB/TrEMBL
      A0A384KQH0, A0A5S9XLC6, A0A654FH00

    2. NM_001203169.1 → NP_001190098.1  uncharacterized protein AT3G55760 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190098.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VES7, Q5EAH9, Q8L722, Q9M048
      UniProtKB/TrEMBL
      A0A384KQH0, A0A5S9XLC6, A0A654FH00

    3. NM_180377.2 → NP_850708.1  uncharacterized protein AT3G55760 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850708.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VES7, Q5EAH9, Q8L722, Q9M048
      UniProtKB/TrEMBL
      A0A384KQH0, A0A5S9XLC6, A0A654FH00
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EAH9.1

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