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    Cysteine proteinases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824950, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cysteine proteinases superfamily protein
    Primary source
    TAIR:AT3G57810
    Locus tag
    AT3G57810
    See related
    Araport:AT3G57810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (21415760..21417961)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene Leucine-rich repeat protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mining the soluble chloroplast proteome by affinity chromatography. Bayer RG, et al. Proteomics, 2011 Apr. PMID 21365755, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084838.2
    NM_001339892.1
    NM_001339893.1
    NM_180385.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cysteine proteinases superfamily protein
    NP_001078307.1
    • Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 624 Blast hits to 624 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
    NP_001319786.1
    • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 631 Blast hits to 631 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
    NP_850716.1
    • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 624 Blast hits to 624 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21415760..21417961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084838.2 → NP_001078307.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078307.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VJL7, A0A2H1ZEL0, K9M8R2, K9M8T1, K9M8Y0, K9M9G5, Q67XW3, Q682S6, Q8LBZ4, Q9M2R6
      UniProtKB/TrEMBL
      A0A384L6P8, A0A5S9XLY3
      Conserved Domains (1) summary
      pfam02338
      Location:174 → 300
      OTU; OTU-like cysteine protease

    2. NM_001339892.1 → NP_001319786.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZEL0

    3. NM_001339893.1 → NP_001326751.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VJL7, A0A2H1ZEL0, K9M8R2, K9M8T1, K9M8Y0, K9M9G5, Q67XW3, Q682S6, Q8LBZ4, Q9M2R6
      UniProtKB/TrEMBL
      A0A384L6P8, A0A5S9XLY3
      Conserved Domains (1) summary
      pfam02338
      Location:174 → 300
      OTU; OTU-like cysteine protease

    4. NM_180385.3 → NP_850716.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850716.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VJL7, A0A2H1ZEL0, K9M8R2, K9M8T1, K9M8Y0, K9M9G5, Q67XW3, Q682S6, Q8LBZ4, Q9M2R6
      UniProtKB/TrEMBL
      A0A384L6P8, A0A5S9XLY3
      Conserved Domains (1) summary
      pfam02338
      Location:174 → 300
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LBZ4.1

    Gene LinkOut

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