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    clathrin adaptor complexes medium subunit family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830383, updated on 18-Sep-2024

    Summary

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    Official Full Name
    clathrin adaptor complexes medium subunit family protein
    Primary source
    TAIR:AT5G05010
    Locus tag
    AT5G05010
    See related
    Araport:AT5G05010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUG13.13; MUG13_13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (1476533..1480197)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNAse I-like superfamily protein Neighboring gene SAD1/UNC-84 domain protein 1 Neighboring gene translocon at the outer envelope membrane of chloroplasts 34 Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036759.2
    NM_120583.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of COPI vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    clathrin adaptor complexes medium subunit family protein
    NP_001031836.1
    • clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); Has 717 Blast hits to 709 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 237; Fungi - 248; Plants - 88; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).
    NP_568147.1
    • clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1476533..1480197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120583.6 → NP_568147.1  clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568147.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56WY5, Q93Y22, Q93Y42, Q9FF73
      UniProtKB/TrEMBL
      A0A178UPK5, A0A5S9Y1H3, A0A654FYU7, B9DGK9
      Conserved Domains (2) summary
      cd09254
      Location:283 → 524
      AP_delta-COPI_MHD; Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit
      cd14830
      Location:4 → 133
      Delta_COP_N; delta subunit of the F-COPI complex, N-terminal domain

    2. NM_001036759.2 → NP_001031836.1  clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031836.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56WY5, Q93Y22, Q93Y42, Q9FF73
      UniProtKB/TrEMBL
      A0A178UPK5, A0A5S9Y1H3, A0A654FYU7, B9DGK9
      Conserved Domains (2) summary
      cd09254
      Location:283 → 524
      AP_delta-COPI_MHD; Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit
      cd14830
      Location:4 → 133
      Delta_COP_N; delta subunit of the F-COPI complex, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93Y22.2

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