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    SPOC domain / Transcription elongation factor S-II protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831014, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SPOC domain / Transcription elongation factor S-II protein
    Primary source
    TAIR:AT5G11430
    Locus tag
    AT5G11430
    See related
    Araport:AT5G11430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15N18.20; F15N18_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (3647862..3652477)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (Protein of unknown function, DUF642) Neighboring gene uncharacterized protein Neighboring gene CTC-interacting domain 5 Neighboring gene PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) Neighboring gene hypothetical protein (DUF581)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BORDER proteins protect expression of neighboring genes by promoting 3' Pol II pausing in plants. Yu X, et al. Nat Commun, 2019 Sep 25. PMID 31554790, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343186.1
    NM_001343187.1
    NM_001343188.1
    NM_001343189.1
    NM_001343190.1
    NM_121181.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SPOC domain / Transcription elongation factor S-II protein
    NP_196704.2
    • SPOC domain / Transcription elongation factor S-II protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G25520.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3647862..3652477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121181.4 → NP_196704.2  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196704.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G072, F4JXV3, Q9LYE6
      Conserved Domains (2) summary
      pfam07500
      Location:259 → 339
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:544 → 650
      SPOC; SPOC domain

    2. NM_001343186.1 → NP_001331051.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFB6, A0A1P8BCP5, A0A384KD70

    3. NM_001343187.1 → NP_001331050.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G072, F4JXV3, Q9LYE6

    4. NM_001343189.1 → NP_001331048.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDY8, A0A1P8BCN9, A0A384KUC4

    5. NM_001343188.1 → NP_001331049.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFB6, A0A1P8BCP5, A0A384KD70

    6. NM_001343190.1 → NP_001331047.1  SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFB6, A0A1P8BCP5, A0A384KD70
    Nucleotide Protein
    Heading Accession and Version

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