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    cotton fiber protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831235, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cotton fiber protein
    Primary source
    TAIR:AT5G13880
    Locus tag
    AT5G13880
    See related
    Araport:AT5G13880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAC12.16; MAC12_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (4477242..4478306, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ELCH-like protein Neighboring gene xyloglucan endotransglucosylase/hydrolase 5 Neighboring gene plant viral-response family protein (DUF716) Neighboring gene microRNA ath-MIR848 precursor Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_121391.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cotton fiber protein
    NP_568291.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4477242..4478306 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343299.1 → NP_001332732.1  cotton fiber protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9FFY5

    2. NM_121391.2 → NP_568291.1  cotton fiber protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568291.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G191, F4K5D0, Q94A70
      Conserved Domains (1) summary
      pfam05553
      Location:151 → 178
      DUF761; Cotton fibre expressed protein
    Nucleotide Protein
    Heading Accession and Version

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