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    CCR4-NOT transcription complex subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831960, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CCR4-NOT transcription complex subunit
    Primary source
    TAIR:AT5G18420
    Locus tag
    AT5G18420
    See related
    Araport:AT5G18420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20L16.140; F20L16_140
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (6105283..6109501, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene transcription activator Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene GATA zinc finger protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343546.1
    NM_121847.5
    NM_180514.4
    NM_203073.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    CCR4-NOT transcription complex subunit
    NP_197343.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_850845.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 233 Blast hits to 233 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
    NP_974802.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6105283..6109501 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121847.5 → NP_197343.1  CCR4-NOT transcription complex subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197343.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGT7, B4F7Q4
      Conserved Domains (1) summary
      pfam10155
      Location:312 → 437
      DUF2363; Uncharacterized conserved protein (DUF2363)

    2. NM_180514.4 → NP_850845.1  CCR4-NOT transcription complex subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850845.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGV6, B4F7N8
      Conserved Domains (1) summary
      pfam10155
      Location:312 → 438
      DUF2363; Uncharacterized conserved protein (DUF2363)

    3. NM_001343546.1 → NP_001332174.1  CCR4-NOT transcription complex subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BG97

    4. NM_203073.1 → NP_974802.1  CCR4-NOT transcription complex subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974802.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGV6, F4JWN4
      Conserved Domains (1) summary
      pfam10155
      Location:309 → 435
      DUF2363; Uncharacterized conserved protein (DUF2363)
    Nucleotide Protein
    Heading Accession and Version

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