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    RHA1 winged-helix DNA-binding transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834610, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RHA1
    Official Full Name
    winged-helix DNA-binding transcription factor family protein
    Primary source
    TAIR:AT5G45710
    Locus tag
    AT5G45710
    See related
    Araport:AT5G45710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT-HSFA4C; HEAT SHOCK TRANSCRIPTION FACTOR A4C; HEAT SHOCK TRANSCRIPTION FACTOR A4C; HSFA4C; MRA19.11; MRA19_11; ROOT HANDEDNESS 1
    Summary
    member of Heat Stress Transcription Factor (Hsf) family
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    Genomic context

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    See RHA1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (18540665..18542864)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene histone acetyltransferase (DUF1264) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene AAA-type ATPase family protein Neighboring gene tRNA-Glu Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new mutant of Arabidopsis disturbed in its roots, right-handed slanting, and gravitropism defines a gene that encodes a heat-shock factor. Fortunati A, et al. J Exp Bot, 2008. PMID 18381353
    2. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001344637.1
    NM_001344638.1
    NM_123938.4
    NM_203162.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within fruit morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive gravitropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to auxin IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    winged-helix DNA-binding transcription factor family protein
    NP_199383.1
    • ROOT HANDEDNESS 1 (RHA1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A4A (TAIR:AT4G18880.1); Has 2389 Blast hits to 2362 proteins in 250 species: Archae - 2; Bacteria - 12; Metazoa - 420; Fungi - 490; Plants - 857; Viruses - 0; Other Eukaryotes - 608 (source: NCBI BLink).
    NP_974891.1
    • ROOT HANDEDNESS 1 (RHA1); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A4A (TAIR:AT4G18880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18540665..18542864
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123938.4 → NP_199383.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199383.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FK72
      UniProtKB/TrEMBL
      A0A178UPK9, A0A5S9YBV1
      Conserved Domains (2) summary
      smart00415
      Location:10 → 103
      HSF; heat shock factor
      pfam05149
      Location:107 → 239
      Flagellar_rod; Paraflagellar rod protein

    2. NM_203162.2 → NP_974891.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974891.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3E8G3
      Conserved Domains (1) summary
      pfam06785
      Location:14 → 82
      UPF0242; Uncharacterized protein family (UPF0242)

    3. NM_001344637.1 → NP_001331800.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FK72
      UniProtKB/TrEMBL
      A0A178UPK9, A0A5S9YBV1
      Conserved Domains (2) summary
      smart00415
      Location:10 → 103
      HSF; heat shock factor
      pfam05149
      Location:107 → 239
      Flagellar_rod; Paraflagellar rod protein

    4. NM_001344638.1 → NP_001331801.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3E8G3
      Conserved Domains (1) summary
      pfam06785
      Location:14 → 82
      UPF0242; Uncharacterized protein family (UPF0242)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FK72.1

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