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    Hyaluronan / mRNA binding family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834767, updated on 18-Sep-2024

    Summary

    Official Full Name
    Hyaluronan / mRNA binding family
    Primary source
    TAIR:AT5G47210
    Locus tag
    AT5G47210
    See related
    Araport:AT5G47210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQL5.6; MQL5_6
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (19168941..19171263, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Plant VAMP (vesicle-associated membrane protein) family protein Neighboring gene Ribosomal protein L19 family protein Neighboring gene RAB GTPase homolog 1A Neighboring gene ethylene responsive element binding factor 2 Neighboring gene pseudo

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001085254.1
    NM_001085255.1
    NM_124092.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
     
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in plasma membrane HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

    Preferred Names
    Hyaluronan / mRNA binding family
    NP_001078723.1
    • Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 14835 Blast hits to 8674 proteins in 878 species: Archae - 15; Bacteria - 4877; Metazoa - 4498; Fungi - 1235; Plants - 1700; Viruses - 202; Other Eukaryotes - 2308 (source: NCBI BLink).
    NP_001078724.1
    • Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 17408 Blast hits to 9992 proteins in 935 species: Archae - 13; Bacteria - 5069; Metazoa - 5239; Fungi - 1478; Plants - 1692; Viruses - 242; Other Eukaryotes - 3675 (source: NCBI BLink).
    NP_199532.1
    • Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19168941..19171263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124092.4NP_199532.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199532.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQD7, A8MRX4, Q8LDQ7, Q9LVT8
      UniProtKB/TrEMBL
      A0A178UQN5, A0A5S9YCF5
      Conserved Domains (2) summary
      pfam04774
      Location:147257
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam09598
      Location:161
      Stm1_N
    2. NM_001085254.1NP_001078723.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078723.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVT8
      Conserved Domains (2) summary
      pfam04774
      Location:147247
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam09598
      Location:562
      Stm1_N; Stm1
    3. NM_001085255.1NP_001078724.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078724.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVT8
      Conserved Domains (2) summary
      pfam04774
      Location:147257
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam09598
      Location:562
      Stm1_N; Stm1