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    Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835568, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Primary source
    TAIR:AT5G54780
    Locus tag
    AT5G54780
    See related
    Araport:AT5G54780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBG8.4; MBG8_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (22248369..22252191, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Translation initiation factor SUI1 family protein Neighboring gene thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CTD small phosphatase-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124859.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    NP_200289.2
    • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G27100.2); Has 4120 Blast hits to 4004 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 2315; Fungi - 731; Plants - 615; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22248369..22252191 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124859.4 → NP_200289.2  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200289.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U6G7, A0A5S9YEL3, Q0WV47
      Conserved Domains (1) summary
      smart00164
      Location:148 → 317
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    Nucleotide Protein
    Heading Accession and Version

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