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    SKIP1 SKP1 interacting partner 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835901, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SKIP1
    Official Full Name
    SKP1 interacting partner 1
    Primary source
    TAIR:AT5G57900
    Locus tag
    AT5G57900
    See related
    Araport:AT5G57900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MTI20.16; MTI20_16; SKP1 interacting partner 1
    Summary
    F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent manner
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    Genomic context

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    See SKIP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (23449694..23450933, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene multipolar spindle 1 Neighboring gene uncharacterized protein Neighboring gene Glutamine amidotransferase type 1 family protein Neighboring gene ncRNA Neighboring gene ribosomal RNA small subunit methyltransferase G Neighboring gene early nodulin-like protein 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant WEE1 kinase is cell cycle regulated and removed at mitosis via the 26S proteasome machinery. Cook GS, et al. J Exp Bot, 2013 Apr. PMID 23536609, Free PMC Article
    2. SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. Farrás R, et al. EMBO J, 2001 Jun 1. PMID 11387208, Free PMC Article
    3. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125175.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1 interacting partner 1
    NP_568870.1
    • SKP1 interacting partner 1 (SKIP1); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G30640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23449694..23450933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125175.2 → NP_568870.1  SKP1 interacting partner 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568870.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FDX1
      UniProtKB/TrEMBL
      A0A178UIF7, A0A5S9YF21, A0A654GC18
      Conserved Domains (2) summary
      cd09293
      Location:89 → 253
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:91 → 113
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FDX1.1

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