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    AT hook motif DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836347, updated on 18-Sep-2024

    Summary

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    Official Full Name
    AT hook motif DNA-binding family protein
    Primary source
    TAIR:AT5G62260
    Locus tag
    AT5G62260
    See related
    Araport:AT5G62260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AHL6; AT-hook motif nuclear localized protein 6; MMI9.9; MMI9_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (25008843..25011666)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ERECTA-like 1 Neighboring gene Cell cycle regulated microtubule associated protein Neighboring gene microtubule-associated protein 65-9 Neighboring gene ribosomal protein L20 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125620.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AT hook motif DNA-binding family protein
    NP_201032.2
    • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT4G25320.1); Has 865 Blast hits to 854 proteins in 59 species: Archae - 0; Bacteria - 11; Metazoa - 37; Fungi - 23; Plants - 764; Viruses - 14; Other Eukaryotes - 16 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25008843..25011666
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345545.1 → NP_001332202.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVB0
      UniProtKB/TrEMBL
      A0A178UMD3, A0A5S9YIJ6
      Conserved Domains (1) summary
      cd11378
      Location:161 → 275
      DUF296; Domain of unknown function found in archaea, bacteria, and plants

    2. NM_001345544.1 → NP_001332201.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGC9

    3. NM_125620.3 → NP_201032.2  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201032.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVB0
      UniProtKB/TrEMBL
      A0A178UMD3, A0A5S9YIJ6
      Conserved Domains (1) summary
      cd11378
      Location:161 → 275
      DUF296; Domain of unknown function found in archaea, bacteria, and plants
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVB0.1

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