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    CRY3 cryptochrome 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832554, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CRY3
    Official Full Name
    cryptochrome 3
    Primary source
    TAIR:AT5G24850
    Locus tag
    AT5G24850
    See related
    Araport:AT5G24850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cryptochrome 3; F6A4.60; F6A4_60
    Summary
    Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.
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    Genomic context

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    See CRY3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (8535258..8538211, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene tRNA (guanine-N-7) methyltransferase Neighboring gene flowering promoting factor 1 Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome. Pokorny R, et al. Proc Natl Acad Sci U S A, 2008 Dec 30. PMID 19074258, Free PMC Article
    2. Cryptochrome 3 from Arabidopsis thaliana: structural and functional analysis of its complex with a folate light antenna. Klar T, et al. J Mol Biol, 2007 Feb 23. PMID 17188299
    3. Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity. Huang Y, et al. Proc Natl Acad Sci U S A, 2006 Nov 21. PMID 17101984, Free PMC Article
    4. An Arabidopsis protein closely related to Synechocystis cryptochrome is targeted to organelles. Kleine T, et al. Plant J, 2003 Jul. PMID 12834405
    5. UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH. Brown BA, et al. Plant Physiol, 2008 Feb. PMID 18055587, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_122394.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT enables DNA photolyase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables FMN binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within photoreactive repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in photoreactive repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    cryptochrome 3
    NP_568461.3
    • cryptochrome 3 (CRY3); FUNCTIONS IN: FMN binding, DNA binding, DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome, DASH (InterPro:IPR014133), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: photolyase/blue-light receptor 2 (TAIR:AT2G47590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8535258..8538211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122394.4 → NP_568461.3  cryptochrome 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KIJ6, Q84KJ5, Q8VZD8
      UniProtKB/TrEMBL
      A0A5S9Y6Z1, A0A654G456, A0A7G2FDT3
      Conserved Domains (1) summary
      TIGR02765
      Location:84 → 515
      crypto_DASH; cryptochrome, DASH family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84KJ5.2

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