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    APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827118, updated on 18-Sep-2024

    Summary

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    Official Symbol
    APS3
    Official Full Name
    Pseudouridine synthase/archaeosine transglycosylase-like family protein
    Primary source
    TAIR:AT4G14680
    Locus tag
    AT4G14680
    See related
    Araport:AT4G14680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3380C; FCAALL.128
    Summary
    ATP sulfurylase
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    Genomic context

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    See APS3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (8413263..8415650, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene casein lytic proteinase B2 Neighboring gene chaperone ClpB1-like protein Neighboring gene Chlorophyll A-B binding family protein Neighboring gene Uncharacterized protein family (UPF0041)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Inter-organ signaling in plants: regulation of ATP sulfurylase and sulfate transporter genes expression in roots mediated by phloem-translocated compound. Lappartient AG, et al. Plant J, 1999 Apr. PMID 10341446
    2. Functional characterization of a gene encoding a fourth ATP sulfurylase isoform from Arabidopsis thaliana. Hatzfeld Y, et al. Gene, 2000 May 2. PMID 10806350
    3. Adenosine-5'-triphosphate-sulfurylase from Arabidopsis thaliana and Escherichia coli are functionally equivalent but structurally and kinetically divergent: nucleotide sequence of two adenosine-5'-triphosphate-sulfurylase cDNAs from Arabidopsis thaliana and analysis of a recombinant enzyme. Murillo M, et al. Arch Biochem Biophys, 1995 Oct 20. PMID 7487067
    4. Reciprocal regulation among miR395, APS and SULTR2;1 in Arabidopsis thaliana. Liang G, et al. Plant Signal Behav, 2010 Oct. PMID 20935495, Free PMC Article
    5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. there is reciprocal regulation between SULTR2;1 and APS genes through miR395.
      Title: Reciprocal regulation among miR395, APS and SULTR2;1 in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001340955.1
    NM_117550.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sulfate adenylyltransferase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sulfate adenylyltransferase (ATP) activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to sulfate starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in hydrogen sulfide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein trimerization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in sulfate assimilation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within sulfate assimilation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast NAS
    Non-traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Pseudouridine synthase/archaeosine transglycosylase-like family protein
    NP_193204.1
    • APS3; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: ATP sulfurylase 1 (TAIR:AT3G22890.1); Has 2059 Blast hits to 2056 proteins in 649 species: Archae - 98; Bacteria - 865; Metazoa - 242; Fungi - 201; Plants - 189; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8413263..8415650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117550.5 → NP_193204.1  Pseudouridine synthase/archaeosine transglycosylase-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193204.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23324, Q42520, Q96530
      UniProtKB/TrEMBL
      A0A178V3I6, A0A5S9XSD7, A0A7G2F2G9
      Conserved Domains (1) summary
      cd00517
      Location:80 → 447
      ATPS; ATP-sulfurylase

    2. NM_001340955.1 → NP_001329676.1  Pseudouridine synthase/archaeosine transglycosylase-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8I9, A0A7G2F2G9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23324.1

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