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    APD4 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 6240532, updated on 18-Sep-2024

    Summary

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    Official Symbol
    APD4
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT2G38195
    Locus tag
    AT2G38195
    See related
    Araport:AT2G38195
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ABERRANT POLLEN DEVELOPMENT 4
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    Genomic context

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    See APD4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (16002263..16006654)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene putative PDX1-like protein 4 Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Four closely-related RING-type E3 ligases, APD1-4, are involved in pollen mitosis II regulation in Arabidopsis. Luo G, et al. J Integr Plant Biol, 2012 Oct. PMID 22897245
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001124995.1
    NM_001124996.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within mitotic cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_001118467.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001118468.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16002263..16006654
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124995.1 → NP_001118467.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118467.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IS12
      Conserved Domains (3) summary
      pfam13920
      Location:271 → 317
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      pfam16040
      Location:24 → 89
      DUF4792; Domain of unknown function (DUF4792)
      pfam16041
      Location:122 → 227
      DUF4793; Domain of unknown function (DUF4793)

    2. NM_001124996.1 → NP_001118468.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118468.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IS12, F4ISV9, O80445, Q4PL85, Q84RL2
      UniProtKB/TrEMBL
      A0A5S9X551, A0A654EZW4
      Conserved Domains (3) summary
      pfam13920
      Location:344 → 390
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      pfam16040
      Location:98 → 162
      DUF4792; Domain of unknown function (DUF4792)
      pfam16041
      Location:191 → 301
      DUF4793; Domain of unknown function (DUF4793)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4ISV9.1

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