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    Serine protease inhibitor, potato inhibitor I-type family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818471, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Serine protease inhibitor, potato inhibitor I-type family protein
    Primary source
    TAIR:AT2G38870
    Locus tag
    AT2G38870
    See related
    Araport:AT2G38870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7F6.4; T7F6_4
    Summary
    Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (16236257..16237280, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Guanylate-binding family protein Neighboring gene Class I glutamine amidotransferase-like superfamily protein Neighboring gene nuclear factor Y, subunit B1 Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cuticular defects lead to full immunity to a major plant pathogen. Chassot C, et al. Plant J, 2007 Mar. PMID 17257167
    2. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129444.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    Serine protease inhibitor, potato inhibitor I-type family protein
    NP_030435.1
    • Serine protease inhibitor, potato inhibitor I-type family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: defense response to fungus, response to wounding; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I13, potato inhibitor I (InterPro:IPR000864); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor, potato inhibitor I-type family protein (TAIR:AT2G38900.2); Has 619 Blast hits to 619 proteins in 59 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 599; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16236257..16237280 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129444.2 → NP_030435.1  Serine protease inhibitor, potato inhibitor I-type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_030435.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRD0, Q9ZV18
      Conserved Domains (1) summary
      pfam00280
      Location:8 → 70
      potato_inhibit; Potato inhibitor I family
    Nucleotide Protein
    Heading Accession and Version

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