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    Exonuclease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819422, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Exonuclease family protein
    Primary source
    TAIR:AT2G48100
    Locus tag
    AT2G48100
    See related
    Araport:AT2G48100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (19670378..19673292)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene oxidoreductase, 2OG-Fe(II) oxygenase family protein Neighboring gene uncharacterized protein Neighboring gene reduced epidermal fluorescence 4 Neighboring gene pale cress protein (PAC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001036483.1
    NM_001036484.1
    NM_001337293.1
    NM_001337296.1
    NM_130377.4
    NM_201986.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3'-5' exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Exonuclease family protein
    NP_001031561.1
    • Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001318445.1
    • Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566124.1
    • Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
    NP_973715.1
    • Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19670378..19673292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337294.1 → NP_001323900.1  Exonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DFN1, F4IN68

    2. NM_001337295.1 → NP_001323898.1  Exonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWW4, A0A7G2EL42, Q8LE91, Q94F18, Q9ZU79
      Conserved Domains (1) summary
      cd06144
      Location:134 → 291
      REX4_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

    3. NM_130377.4 → NP_566124.1  Exonuclease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566124.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWW4, A0A7G2EL42, Q8LE91, Q94F18, Q9ZU79
      Conserved Domains (1) summary
      cd06144
      Location:134 → 291
      REX4_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

    4. NM_001337293.1 → NP_001318445.1  Exonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWW4, A0A7G2EL42, Q8LE91, Q94F18, Q9ZU79
      Conserved Domains (1) summary
      cd06144
      Location:134 → 291
      REX4_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

    5. NM_001036484.1 → NP_001031561.1  Exonuclease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031561.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DFN1, F4IN68
      Conserved Domains (1) summary
      cl10012
      Location:134 → 242
      DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

    6. NM_001337296.1 → NP_001323899.1  Exonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWW4, A0A7G2EL42, Q8LE91, Q94F18, Q9ZU79
      Conserved Domains (1) summary
      cd06144
      Location:134 → 291
      REX4_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

    7. NM_001036483.1 → NP_001031560.1  Exonuclease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031560.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWW4, A0A7G2EL42, Q8LE91, Q94F18, Q9ZU79
      Conserved Domains (1) summary
      cd06144
      Location:134 → 291
      REX4_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

    8. NM_201986.1 → NP_973715.1  Exonuclease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973715.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWW4, A0A7G2EL42, Q8LE91, Q94F18, Q9ZU79
      Conserved Domains (1) summary
      cd06144
      Location:134 → 291
      REX4_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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