U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ELKS/Rab6-interacting/CAST family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838603, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    ELKS/Rab6-interacting/CAST family protein
    Primary source
    TAIR:AT1G03290
    Locus tag
    AT1G03290
    See related
    Araport:AT1G03290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K9.11; F15K9_11
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (807361..813216)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) Neighboring gene debranching enzyme 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterization of a phosphatase 2C protein as an interacting partner of the histone acetyltransferase GCN5 in Arabidopsis. Servet C, et al. Biochim Biophys Acta, 2008 Jun-Jul. PMID 18498779
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001197969.2
    NM_001331401.1
    NM_001331402.1
    NM_001331403.1
    NM_001331404.1
    NM_100211.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ELKS/Rab6-interacting/CAST family protein
    NP_001184898.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2).
    NP_171828.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2); Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257; Bacteria - 2402; Metazoa - 5637; Fungi - 960; Plants - 675; Viruses - 54; Other Eukaryotes - 3602 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      807361..813216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197969.2 → NP_001184898.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184898.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKZ9, A0A384L3Y1, A0A5S9SCG8, Q9ZVT0
      Conserved Domains (1) summary
      NF033930
      Location:292 → 486
      pneumo_PspA; pneumococcal surface protein A

    2. NM_001331401.1 → NP_001322179.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKZ9, A0A384L3Y1, A0A5S9SCG8, Q9ZVT0
      Conserved Domains (1) summary
      NF033930
      Location:292 → 486
      pneumo_PspA; pneumococcal surface protein A

    3. NM_001331402.1 → NP_001322180.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKZ9, A0A384L3Y1, A0A5S9SCG8, Q9ZVT0
      Conserved Domains (1) summary
      NF033930
      Location:292 → 486
      pneumo_PspA; pneumococcal surface protein A

    4. NM_100211.4 → NP_171828.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171828.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKZ9, A0A384L3Y1, A0A5S9SCG8, Q9ZVT0
      Conserved Domains (1) summary
      NF033930
      Location:292 → 486
      pneumo_PspA; pneumococcal surface protein A

    5. NM_001331403.1 → NP_001322181.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT68, A0A5S9SCG8

    6. NM_001331404.1 → NP_001322182.1  ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT82, A0A5S9SCG8
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.