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    HBP1 SOUL heme-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838280, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HBP1
    Official Full Name
    SOUL heme-binding family protein
    Primary source
    TAIR:AT1G17100
    Locus tag
    AT1G17100
    See related
    Araport:AT1G17100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtHBP1; F20D23.21; F20D23_21; haem-binding protein 1
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    Genomic context

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    See HBP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (5844646..5845661)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein Neighboring gene Ribosomal protein L18ae family Neighboring gene uncharacterized protein Neighboring gene ubiquitin-specific protease 15 Neighboring gene cationic amino acid transporter 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of cytosolic tetrapyrrole-binding proteins in Arabidopsis thaliana. Takahashi S, et al. Photochem Photobiol Sci, 2008 Oct. PMID 18846286
    2. Disrupting the bimolecular binding of the haem-binding protein 5 (AtHBP5) to haem oxygenase 1 (HY1) leads to oxidative stress in Arabidopsis. Lee HJ, et al. J Exp Bot, 2012 Oct. PMID 22991161, Free PMC Article
    3. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101570.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    SOUL heme-binding family protein
    NP_173153.1
    • SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G78450.1); Has 1318 Blast hits to 1294 proteins in 131 species: Archae - 15; Bacteria - 114; Metazoa - 250; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5844646..5845661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101570.4 → NP_173153.1  SOUL heme-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173153.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6J0, Q9SHG8
      Conserved Domains (1) summary
      pfam04832
      Location:45 → 227
      SOUL; SOUL heme-binding protein
    Nucleotide Protein
    Heading Accession and Version

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