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    STIPL1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838277, updated on 18-Sep-2024

    Summary

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    Official Symbol
    STIPL1
    Official Full Name
    GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
    Primary source
    TAIR:AT1G17070
    Locus tag
    AT1G17070
    See related
    Araport:AT1G17070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D23.23; F20D23_23; SPLICEOSOMAL TIMEKEEPER LOCUS1
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    Genomic context

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    See STIPL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (5837590..5840332)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene solanesyl diphosphate synthase 2 Neighboring gene uncharacterized protein Neighboring gene cytochrome p450 72c1 Neighboring gene ncRNA Neighboring gene Ribosomal protein L18ae family Neighboring gene uncharacterized protein Neighboring gene SOUL heme-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects. Jones MA, et al. Plant Cell, 2012 Oct. PMID 23110899, Free PMC Article
    2. NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis. Dolata J, et al. EMBO J, 2015 Feb 12. PMID 25568310, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. STIPL1 is associated with circadian clock functions.
      Title: Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects.
    Submit: New GeneRIF Correction

    General gene information

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    NM_101567.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables U1 snRNP binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in spliceosomal complex disassembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear lumen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
    NP_173150.1
    • GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT2G42330.2); Has 1264 Blast hits to 1232 proteins in 250 species: Archae - 2; Bacteria - 6; Metazoa - 735; Fungi - 146; Plants - 190; Viruses - 1; Other Eukaryotes - 184 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5837590..5840332
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101567.3 → NP_173150.1  GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173150.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56W84, Q8LEM9, Q9SHG6
      UniProtKB/TrEMBL
      A0A178W428
      Conserved Domains (3) summary
      pfam01585
      Location:200 → 243
      G-patch; G-patch domain
      pfam07842
      Location:420 → 687
      GCFC; GC-rich sequence DNA-binding factor-like protein
      pfam12457
      Location:6 → 105
      TIP_N; Tuftelin interacting protein N terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SHG6.1

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